Cargando…

Lack of evidence for ribosomal frameshifting in ATP7B mRNA decoding

The research article describing the discovery of ribosomal frameshifting in the bacterial CopA gene also reported the occurrence of frameshifting in the expression of the human ortholog ATP7B based on assays using dual luciferase reporters. An examination of the publicly available ribosome profiling...

Descripción completa

Detalles Bibliográficos
Autores principales: Loughran, Gary, Fedorova, Alla D., Khan, Yousuf A., Atkins, John F., Baranov, Pavel V.
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Cell Press 2022
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9548414/
https://www.ncbi.nlm.nih.gov/pubmed/36115342
http://dx.doi.org/10.1016/j.molcel.2022.08.024
_version_ 1784805429637808128
author Loughran, Gary
Fedorova, Alla D.
Khan, Yousuf A.
Atkins, John F.
Baranov, Pavel V.
author_facet Loughran, Gary
Fedorova, Alla D.
Khan, Yousuf A.
Atkins, John F.
Baranov, Pavel V.
author_sort Loughran, Gary
collection PubMed
description The research article describing the discovery of ribosomal frameshifting in the bacterial CopA gene also reported the occurrence of frameshifting in the expression of the human ortholog ATP7B based on assays using dual luciferase reporters. An examination of the publicly available ribosome profiling data and the phylogenetic analysis of the proposed frameshifting site cast doubt on the validity of this claim and prompted us to reexamine the evidence. We observed similar apparent frameshifting efficiencies as the original authors using the same type of vector that synthesizes both luciferases as a single polyprotein. However, we noticed anomalously low absolute luciferase activities from the N-terminal reporter that suggests interference of reporter activity or levels by the ATP7B test cassette. When we tested the same proposed ATP7B frameshifting cassette in a more recently developed reporter system in which the reporters are released without being included in a polyprotein, no frameshifting was detected above background levels.
format Online
Article
Text
id pubmed-9548414
institution National Center for Biotechnology Information
language English
publishDate 2022
publisher Cell Press
record_format MEDLINE/PubMed
spelling pubmed-95484142022-10-13 Lack of evidence for ribosomal frameshifting in ATP7B mRNA decoding Loughran, Gary Fedorova, Alla D. Khan, Yousuf A. Atkins, John F. Baranov, Pavel V. Mol Cell Matters Arising The research article describing the discovery of ribosomal frameshifting in the bacterial CopA gene also reported the occurrence of frameshifting in the expression of the human ortholog ATP7B based on assays using dual luciferase reporters. An examination of the publicly available ribosome profiling data and the phylogenetic analysis of the proposed frameshifting site cast doubt on the validity of this claim and prompted us to reexamine the evidence. We observed similar apparent frameshifting efficiencies as the original authors using the same type of vector that synthesizes both luciferases as a single polyprotein. However, we noticed anomalously low absolute luciferase activities from the N-terminal reporter that suggests interference of reporter activity or levels by the ATP7B test cassette. When we tested the same proposed ATP7B frameshifting cassette in a more recently developed reporter system in which the reporters are released without being included in a polyprotein, no frameshifting was detected above background levels. Cell Press 2022-10-06 /pmc/articles/PMC9548414/ /pubmed/36115342 http://dx.doi.org/10.1016/j.molcel.2022.08.024 Text en © 2022 The Author(s) https://creativecommons.org/licenses/by/4.0/This is an open access article under the CC BY license (http://creativecommons.org/licenses/by/4.0/).
spellingShingle Matters Arising
Loughran, Gary
Fedorova, Alla D.
Khan, Yousuf A.
Atkins, John F.
Baranov, Pavel V.
Lack of evidence for ribosomal frameshifting in ATP7B mRNA decoding
title Lack of evidence for ribosomal frameshifting in ATP7B mRNA decoding
title_full Lack of evidence for ribosomal frameshifting in ATP7B mRNA decoding
title_fullStr Lack of evidence for ribosomal frameshifting in ATP7B mRNA decoding
title_full_unstemmed Lack of evidence for ribosomal frameshifting in ATP7B mRNA decoding
title_short Lack of evidence for ribosomal frameshifting in ATP7B mRNA decoding
title_sort lack of evidence for ribosomal frameshifting in atp7b mrna decoding
topic Matters Arising
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9548414/
https://www.ncbi.nlm.nih.gov/pubmed/36115342
http://dx.doi.org/10.1016/j.molcel.2022.08.024
work_keys_str_mv AT loughrangary lackofevidenceforribosomalframeshiftinginatp7bmrnadecoding
AT fedorovaallad lackofevidenceforribosomalframeshiftinginatp7bmrnadecoding
AT khanyousufa lackofevidenceforribosomalframeshiftinginatp7bmrnadecoding
AT atkinsjohnf lackofevidenceforribosomalframeshiftinginatp7bmrnadecoding
AT baranovpavelv lackofevidenceforribosomalframeshiftinginatp7bmrnadecoding