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Differential expression of circRNAs of testes with high and low sperm motility in Yili geese
The aim of this study was to explore the potential biological function of circular RNAs (circRNAs) in the sperm motility traits of Xinjiang Yili geese, and to provide a reference for analyzing the mechanism of regulation of Yili geese sperm motility. The 10 selected Xinjiang Yili Geese with high or...
Autores principales: | , , , , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
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Frontiers Media S.A.
2022
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Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9548634/ https://www.ncbi.nlm.nih.gov/pubmed/36226183 http://dx.doi.org/10.3389/fgene.2022.970097 |
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author | Wu, Yingping Li, Haiying Zhao, Xiaoyu Baki, Gulnar Ma, Chen Yao, Yingying Li, Jiahui Yao, Yang Wang, Lin |
author_facet | Wu, Yingping Li, Haiying Zhao, Xiaoyu Baki, Gulnar Ma, Chen Yao, Yingying Li, Jiahui Yao, Yang Wang, Lin |
author_sort | Wu, Yingping |
collection | PubMed |
description | The aim of this study was to explore the potential biological function of circular RNAs (circRNAs) in the sperm motility traits of Xinjiang Yili geese, and to provide a reference for analyzing the mechanism of regulation of Yili geese sperm motility. The 10 selected Xinjiang Yili Geese with high or low sperm motility (five for each group) were 3 years old, in good health, and were kept in the same feeding conditions. Yili geese were slaughtered for the collection of testicular tissue and high-throughput sequencing technology was used to screen differentially expressed circRNAs for bioinformatics analysis. Combined with the previously screened miRNAs related to the sperm motility of Yili geese, the circRNAs miRNAs regulatory network was constructed. The results showed that a total of 26,311 circRNAs were obtained from testicular tissues with high and low sperm motility, and 173 DECs were screened between the two groups (p < 0.05, |log2Foldchange|>0), of which 82 were up-regulated and 91 were down-regulated. Functional analysis of the source genes of these DECs showed that the source genes were mainly involved in biological processes. KEGG enrichment analysis showed that the source genes of DECs were mainly enriched in autophagy-animal, ubiquinone and other terpenoid-quinone biosynthesis, progesterone-mediated oocyte maturation, regulation of the actin cytoskeleton and other pathways. Furthermore, the visual regulatory network of differential circRNA-miRNA-mRNA was constructed, including 20 circRNAs, 18 miRNAs and 177 mRNAs, and nine core regulatory circRNAs were screened, including novell_circ_0045314, novel_circ_0019994 and novel_circ_0020422, etc., targeting ppy-mir-16, hsa-mir-221–3p, gga-mir-499–5p, etc. The results suggest that circRNAs may interact with miRNAs to further regulate mRNA to regulate sperm motility in Yili geese, so as to provide a reference for analyzing the molecular mechanism of sperm motility regulation. |
format | Online Article Text |
id | pubmed-9548634 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2022 |
publisher | Frontiers Media S.A. |
record_format | MEDLINE/PubMed |
spelling | pubmed-95486342022-10-11 Differential expression of circRNAs of testes with high and low sperm motility in Yili geese Wu, Yingping Li, Haiying Zhao, Xiaoyu Baki, Gulnar Ma, Chen Yao, Yingying Li, Jiahui Yao, Yang Wang, Lin Front Genet Genetics The aim of this study was to explore the potential biological function of circular RNAs (circRNAs) in the sperm motility traits of Xinjiang Yili geese, and to provide a reference for analyzing the mechanism of regulation of Yili geese sperm motility. The 10 selected Xinjiang Yili Geese with high or low sperm motility (five for each group) were 3 years old, in good health, and were kept in the same feeding conditions. Yili geese were slaughtered for the collection of testicular tissue and high-throughput sequencing technology was used to screen differentially expressed circRNAs for bioinformatics analysis. Combined with the previously screened miRNAs related to the sperm motility of Yili geese, the circRNAs miRNAs regulatory network was constructed. The results showed that a total of 26,311 circRNAs were obtained from testicular tissues with high and low sperm motility, and 173 DECs were screened between the two groups (p < 0.05, |log2Foldchange|>0), of which 82 were up-regulated and 91 were down-regulated. Functional analysis of the source genes of these DECs showed that the source genes were mainly involved in biological processes. KEGG enrichment analysis showed that the source genes of DECs were mainly enriched in autophagy-animal, ubiquinone and other terpenoid-quinone biosynthesis, progesterone-mediated oocyte maturation, regulation of the actin cytoskeleton and other pathways. Furthermore, the visual regulatory network of differential circRNA-miRNA-mRNA was constructed, including 20 circRNAs, 18 miRNAs and 177 mRNAs, and nine core regulatory circRNAs were screened, including novell_circ_0045314, novel_circ_0019994 and novel_circ_0020422, etc., targeting ppy-mir-16, hsa-mir-221–3p, gga-mir-499–5p, etc. The results suggest that circRNAs may interact with miRNAs to further regulate mRNA to regulate sperm motility in Yili geese, so as to provide a reference for analyzing the molecular mechanism of sperm motility regulation. Frontiers Media S.A. 2022-09-26 /pmc/articles/PMC9548634/ /pubmed/36226183 http://dx.doi.org/10.3389/fgene.2022.970097 Text en Copyright © 2022 Wu, Li, Zhao, Baki, Ma, Yao, Li, Yao and Wang. https://creativecommons.org/licenses/by/4.0/This is an open-access article distributed under the terms of the Creative Commons Attribution License (CC BY). The use, distribution or reproduction in other forums is permitted, provided the original author(s) and the copyright owner(s) are credited and that the original publication in this journal is cited, in accordance with accepted academic practice. No use, distribution or reproduction is permitted which does not comply with these terms. |
spellingShingle | Genetics Wu, Yingping Li, Haiying Zhao, Xiaoyu Baki, Gulnar Ma, Chen Yao, Yingying Li, Jiahui Yao, Yang Wang, Lin Differential expression of circRNAs of testes with high and low sperm motility in Yili geese |
title | Differential expression of circRNAs of testes with high and low sperm motility in Yili geese |
title_full | Differential expression of circRNAs of testes with high and low sperm motility in Yili geese |
title_fullStr | Differential expression of circRNAs of testes with high and low sperm motility in Yili geese |
title_full_unstemmed | Differential expression of circRNAs of testes with high and low sperm motility in Yili geese |
title_short | Differential expression of circRNAs of testes with high and low sperm motility in Yili geese |
title_sort | differential expression of circrnas of testes with high and low sperm motility in yili geese |
topic | Genetics |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9548634/ https://www.ncbi.nlm.nih.gov/pubmed/36226183 http://dx.doi.org/10.3389/fgene.2022.970097 |
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