Cargando…

Fluorinated derivatives of tetrahydroaltersolanol molecule on COVID-19, HIV, and HTLV protease by DFT and molecular docking approaches

Structural, optoelectronic, and biological properties of tetrahydroaltersolanol (C(16)H(20)O(7)) and fluorinated derivatives are calculated using density functional theory (DFT) and molecular docking approaches. It is shown that the pure C(16)H(20)O(7) molecule has a direct HOMO–LUMO energy gap abou...

Descripción completa

Detalles Bibliográficos
Autores principales: Azadparvar, Maliheh, Kheirabadi, M., Aliabad, H. A. Rahnamaye
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Springer Berlin Heidelberg 2022
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9550597/
https://www.ncbi.nlm.nih.gov/pubmed/36217060
http://dx.doi.org/10.1007/s00894-022-05340-3
_version_ 1784805914778271744
author Azadparvar, Maliheh
Kheirabadi, M.
Aliabad, H. A. Rahnamaye
author_facet Azadparvar, Maliheh
Kheirabadi, M.
Aliabad, H. A. Rahnamaye
author_sort Azadparvar, Maliheh
collection PubMed
description Structural, optoelectronic, and biological properties of tetrahydroaltersolanol (C(16)H(20)O(7)) and fluorinated derivatives are calculated using density functional theory (DFT) and molecular docking approaches. It is shown that the pure C(16)H(20)O(7) molecule has a direct HOMO–LUMO energy gap about 3.1 eV. The substitution of F atom at A category decreases the electronic energy gap, while it is constant at B category. In A category, the behavior of the pure molecule changed from insulator to semiconductor with various substitution of F atom. The electronic properties were depended on the F sites in the pure molecule. The molecular electrical transport properties and charge-transfer possibilities increase with decreasing energy gap. The pure C(16)H(20)O(7) molecule with high energy gap has low chemical reactivity and substitution of F atom at considered molecule increases chemical reactivity. Obtained results show that F-O bonds in trifurcation bonds of C(16)H(19)O(7)(F14), C(16)H(19)O(7)(F16), and C(16)H(19)O(7)(F17) molecules play a key role in confronting with COVID-19, HIV, and HTLV proteases, respectively. Optical spectra, such as the dielectric functions, electron energy-loss spectroscopy, refractive index, extinction coefficient, and reflection spectra show that fluorinated derivatives of C(16)H(20)O(7) at B category can be used in the new drugs. GRAPHICAL ABSTRACT: [Image: see text]
format Online
Article
Text
id pubmed-9550597
institution National Center for Biotechnology Information
language English
publishDate 2022
publisher Springer Berlin Heidelberg
record_format MEDLINE/PubMed
spelling pubmed-95505972022-10-11 Fluorinated derivatives of tetrahydroaltersolanol molecule on COVID-19, HIV, and HTLV protease by DFT and molecular docking approaches Azadparvar, Maliheh Kheirabadi, M. Aliabad, H. A. Rahnamaye J Mol Model Original Paper Structural, optoelectronic, and biological properties of tetrahydroaltersolanol (C(16)H(20)O(7)) and fluorinated derivatives are calculated using density functional theory (DFT) and molecular docking approaches. It is shown that the pure C(16)H(20)O(7) molecule has a direct HOMO–LUMO energy gap about 3.1 eV. The substitution of F atom at A category decreases the electronic energy gap, while it is constant at B category. In A category, the behavior of the pure molecule changed from insulator to semiconductor with various substitution of F atom. The electronic properties were depended on the F sites in the pure molecule. The molecular electrical transport properties and charge-transfer possibilities increase with decreasing energy gap. The pure C(16)H(20)O(7) molecule with high energy gap has low chemical reactivity and substitution of F atom at considered molecule increases chemical reactivity. Obtained results show that F-O bonds in trifurcation bonds of C(16)H(19)O(7)(F14), C(16)H(19)O(7)(F16), and C(16)H(19)O(7)(F17) molecules play a key role in confronting with COVID-19, HIV, and HTLV proteases, respectively. Optical spectra, such as the dielectric functions, electron energy-loss spectroscopy, refractive index, extinction coefficient, and reflection spectra show that fluorinated derivatives of C(16)H(20)O(7) at B category can be used in the new drugs. GRAPHICAL ABSTRACT: [Image: see text] Springer Berlin Heidelberg 2022-10-11 2022 /pmc/articles/PMC9550597/ /pubmed/36217060 http://dx.doi.org/10.1007/s00894-022-05340-3 Text en © The Author(s), under exclusive licence to Springer-Verlag GmbH Germany, part of Springer Nature 2022, Springer Nature or its licensor holds exclusive rights to this article under a publishing agreement with the author(s) or other rightsholder(s); author self-archiving of the accepted manuscript version of this article is solely governed by the terms of such publishing agreement and applicable law. This article is made available via the PMC Open Access Subset for unrestricted research re-use and secondary analysis in any form or by any means with acknowledgement of the original source. These permissions are granted for the duration of the World Health Organization (WHO) declaration of COVID-19 as a global pandemic.
spellingShingle Original Paper
Azadparvar, Maliheh
Kheirabadi, M.
Aliabad, H. A. Rahnamaye
Fluorinated derivatives of tetrahydroaltersolanol molecule on COVID-19, HIV, and HTLV protease by DFT and molecular docking approaches
title Fluorinated derivatives of tetrahydroaltersolanol molecule on COVID-19, HIV, and HTLV protease by DFT and molecular docking approaches
title_full Fluorinated derivatives of tetrahydroaltersolanol molecule on COVID-19, HIV, and HTLV protease by DFT and molecular docking approaches
title_fullStr Fluorinated derivatives of tetrahydroaltersolanol molecule on COVID-19, HIV, and HTLV protease by DFT and molecular docking approaches
title_full_unstemmed Fluorinated derivatives of tetrahydroaltersolanol molecule on COVID-19, HIV, and HTLV protease by DFT and molecular docking approaches
title_short Fluorinated derivatives of tetrahydroaltersolanol molecule on COVID-19, HIV, and HTLV protease by DFT and molecular docking approaches
title_sort fluorinated derivatives of tetrahydroaltersolanol molecule on covid-19, hiv, and htlv protease by dft and molecular docking approaches
topic Original Paper
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9550597/
https://www.ncbi.nlm.nih.gov/pubmed/36217060
http://dx.doi.org/10.1007/s00894-022-05340-3
work_keys_str_mv AT azadparvarmaliheh fluorinatedderivativesoftetrahydroaltersolanolmoleculeoncovid19hivandhtlvproteasebydftandmoleculardockingapproaches
AT kheirabadim fluorinatedderivativesoftetrahydroaltersolanolmoleculeoncovid19hivandhtlvproteasebydftandmoleculardockingapproaches
AT aliabadharahnamaye fluorinatedderivativesoftetrahydroaltersolanolmoleculeoncovid19hivandhtlvproteasebydftandmoleculardockingapproaches