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A newly identified pyroptosis-related gene signature for predicting prognosis of patients with hepatocellular cancer

BACKGROUND: Hepatocellular carcinoma (HCC) is a very heterogeneous illness, making prognosis prediction a huge problem. Pyroptosis, which has recently been shown to be an inflammatory type of programmed cell death, is involved in HCC. Nevertheless, the role of pyroptosis-related genes in HCC has not...

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Autores principales: Shen, Qinyan, Jiang, Yangping, Hu, Xihong, Du, Zhenwu
Formato: Online Artículo Texto
Lenguaje:English
Publicado: AME Publishing Company 2022
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9552084/
https://www.ncbi.nlm.nih.gov/pubmed/36237236
http://dx.doi.org/10.21037/tcr-22-366
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author Shen, Qinyan
Jiang, Yangping
Hu, Xihong
Du, Zhenwu
author_facet Shen, Qinyan
Jiang, Yangping
Hu, Xihong
Du, Zhenwu
author_sort Shen, Qinyan
collection PubMed
description BACKGROUND: Hepatocellular carcinoma (HCC) is a very heterogeneous illness, making prognosis prediction a huge problem. Pyroptosis, which has recently been shown to be an inflammatory type of programmed cell death, is involved in HCC. Nevertheless, the role of pyroptosis-related genes in HCC has not been fully elucidated. Thus, this study aimed to construct a prognostic signature based on pyroptosis-related genes for HCC. METHODS: The messenger RNA expression patterns of HCC patients, as well as the accompanying clinical information, were retrieved from The Cancer Genome Atlas (TCGA) database for this research. After differentially expressed pyroptosis-related Gene in tumor and normal groups were identified, Cox regression analyses were performed to construct a prognostic signature which was then assessed through independent prognostic analysis. RESULTS: A signature consisting of four genes (CASP8, GSDME, NOD2, and PLCG1) was constructed to predict overall survival (OS) for HCC. The signature was identified to be independent by the cox regression analysis and obtained the largest area under the receiver operating characteristic (ROC) curve (AUC) was 0.691, 0.628, and 0.632 for survival at 1, 2, and 3 years, respectively. CONCLUSIONS: We discovered that the levels of pyroptosis-related genes expression differed across HCC patients and were associated with both survival and prognosis. This suggested that targeting pyroptosis as a treatment strategy for HCC may be a viable option.
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spelling pubmed-95520842022-10-12 A newly identified pyroptosis-related gene signature for predicting prognosis of patients with hepatocellular cancer Shen, Qinyan Jiang, Yangping Hu, Xihong Du, Zhenwu Transl Cancer Res Original Article BACKGROUND: Hepatocellular carcinoma (HCC) is a very heterogeneous illness, making prognosis prediction a huge problem. Pyroptosis, which has recently been shown to be an inflammatory type of programmed cell death, is involved in HCC. Nevertheless, the role of pyroptosis-related genes in HCC has not been fully elucidated. Thus, this study aimed to construct a prognostic signature based on pyroptosis-related genes for HCC. METHODS: The messenger RNA expression patterns of HCC patients, as well as the accompanying clinical information, were retrieved from The Cancer Genome Atlas (TCGA) database for this research. After differentially expressed pyroptosis-related Gene in tumor and normal groups were identified, Cox regression analyses were performed to construct a prognostic signature which was then assessed through independent prognostic analysis. RESULTS: A signature consisting of four genes (CASP8, GSDME, NOD2, and PLCG1) was constructed to predict overall survival (OS) for HCC. The signature was identified to be independent by the cox regression analysis and obtained the largest area under the receiver operating characteristic (ROC) curve (AUC) was 0.691, 0.628, and 0.632 for survival at 1, 2, and 3 years, respectively. CONCLUSIONS: We discovered that the levels of pyroptosis-related genes expression differed across HCC patients and were associated with both survival and prognosis. This suggested that targeting pyroptosis as a treatment strategy for HCC may be a viable option. AME Publishing Company 2022-09 /pmc/articles/PMC9552084/ /pubmed/36237236 http://dx.doi.org/10.21037/tcr-22-366 Text en 2022 Translational Cancer Research. All rights reserved. https://creativecommons.org/licenses/by-nc-nd/4.0/Open Access Statement: This is an Open Access article distributed in accordance with the Creative Commons Attribution-NonCommercial-NoDerivs 4.0 International License (CC BY-NC-ND 4.0), which permits the non-commercial replication and distribution of the article with the strict proviso that no changes or edits are made and the original work is properly cited (including links to both the formal publication through the relevant DOI and the license). See: https://creativecommons.org/licenses/by-nc-nd/4.0 (https://creativecommons.org/licenses/by-nc-nd/4.0/) .
spellingShingle Original Article
Shen, Qinyan
Jiang, Yangping
Hu, Xihong
Du, Zhenwu
A newly identified pyroptosis-related gene signature for predicting prognosis of patients with hepatocellular cancer
title A newly identified pyroptosis-related gene signature for predicting prognosis of patients with hepatocellular cancer
title_full A newly identified pyroptosis-related gene signature for predicting prognosis of patients with hepatocellular cancer
title_fullStr A newly identified pyroptosis-related gene signature for predicting prognosis of patients with hepatocellular cancer
title_full_unstemmed A newly identified pyroptosis-related gene signature for predicting prognosis of patients with hepatocellular cancer
title_short A newly identified pyroptosis-related gene signature for predicting prognosis of patients with hepatocellular cancer
title_sort newly identified pyroptosis-related gene signature for predicting prognosis of patients with hepatocellular cancer
topic Original Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9552084/
https://www.ncbi.nlm.nih.gov/pubmed/36237236
http://dx.doi.org/10.21037/tcr-22-366
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