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Potassium channel-related genes are a novel prognostic signature for the tumor microenvironment of renal clear cell carcinoma

Clear cell renal cell carcinoma (ccRCC) accounts for 80% of renal cell carcinomas (RCCs), and its morbidity and prognosis are unfavorable. Surgical resection is the first-line treatment for ccRCC, but the oncogenesis of ccRCC is very complex. With the development of high-throughput sequencing techno...

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Autores principales: Zeng, Rui, Li, Yi, He, Dong-ming, Sun, Meng-zhu, Huang, Wen-qing, Wang, Yu-hang, Zhuo, Yu-min, Chen, Jun-jiang, Chen, Tai-heng, Guo, Jing-hui, Huang, Jun
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Frontiers Media S.A. 2022
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9552761/
https://www.ncbi.nlm.nih.gov/pubmed/36237326
http://dx.doi.org/10.3389/fonc.2022.1013324
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author Zeng, Rui
Li, Yi
He, Dong-ming
Sun, Meng-zhu
Huang, Wen-qing
Wang, Yu-hang
Zhuo, Yu-min
Chen, Jun-jiang
Chen, Tai-heng
Guo, Jing-hui
Huang, Jun
author_facet Zeng, Rui
Li, Yi
He, Dong-ming
Sun, Meng-zhu
Huang, Wen-qing
Wang, Yu-hang
Zhuo, Yu-min
Chen, Jun-jiang
Chen, Tai-heng
Guo, Jing-hui
Huang, Jun
author_sort Zeng, Rui
collection PubMed
description Clear cell renal cell carcinoma (ccRCC) accounts for 80% of renal cell carcinomas (RCCs), and its morbidity and prognosis are unfavorable. Surgical resection is the first-line treatment for ccRCC, but the oncogenesis of ccRCC is very complex. With the development of high-throughput sequencing technology, it is necessary to analyze the transcriptome to determine more effective treatment methods. The tumor microenvironment (TME) is composed of tumor cells, various immune-infiltrating cells, fibroblasts, many cytokines, and catalysts. It is a complex system with a dynamic balance that plays an essential role in tumor growth, invasion, and metastasis. Previous studies have confirmed that potassium channels can affect the immune system, especially T lymphocytes that require potassium channel activation. However, the effect of potassium channels on the TME of ccRCC remains to be studied. Therefore, this study aims to construct a prognostic signature for ccRCC patients based on potassium ion channel-related genes (PCRGs), assess patient risk scores, and divide patients into high- and low-risk groups based on the cutoff value. In addition, we investigated whether there were differences in immune cell infiltration, immune activator expression, somatic mutations, and chemotherapeutic responses between the high- and low-risk groups. Our results demonstrate that the PCRG signature can accurately assess patient prognosis and the tumor microenvironment and predict chemotherapeutic responses. In summary, the PCRG signature could serve as an auxiliary tool for the precision treatment of ccRCC.
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spelling pubmed-95527612022-10-12 Potassium channel-related genes are a novel prognostic signature for the tumor microenvironment of renal clear cell carcinoma Zeng, Rui Li, Yi He, Dong-ming Sun, Meng-zhu Huang, Wen-qing Wang, Yu-hang Zhuo, Yu-min Chen, Jun-jiang Chen, Tai-heng Guo, Jing-hui Huang, Jun Front Oncol Oncology Clear cell renal cell carcinoma (ccRCC) accounts for 80% of renal cell carcinomas (RCCs), and its morbidity and prognosis are unfavorable. Surgical resection is the first-line treatment for ccRCC, but the oncogenesis of ccRCC is very complex. With the development of high-throughput sequencing technology, it is necessary to analyze the transcriptome to determine more effective treatment methods. The tumor microenvironment (TME) is composed of tumor cells, various immune-infiltrating cells, fibroblasts, many cytokines, and catalysts. It is a complex system with a dynamic balance that plays an essential role in tumor growth, invasion, and metastasis. Previous studies have confirmed that potassium channels can affect the immune system, especially T lymphocytes that require potassium channel activation. However, the effect of potassium channels on the TME of ccRCC remains to be studied. Therefore, this study aims to construct a prognostic signature for ccRCC patients based on potassium ion channel-related genes (PCRGs), assess patient risk scores, and divide patients into high- and low-risk groups based on the cutoff value. In addition, we investigated whether there were differences in immune cell infiltration, immune activator expression, somatic mutations, and chemotherapeutic responses between the high- and low-risk groups. Our results demonstrate that the PCRG signature can accurately assess patient prognosis and the tumor microenvironment and predict chemotherapeutic responses. In summary, the PCRG signature could serve as an auxiliary tool for the precision treatment of ccRCC. Frontiers Media S.A. 2022-09-28 /pmc/articles/PMC9552761/ /pubmed/36237326 http://dx.doi.org/10.3389/fonc.2022.1013324 Text en Copyright © 2022 Zeng, Li, He, Sun, Huang, Wang, Zhuo, Chen, Chen, Guo and Huang https://creativecommons.org/licenses/by/4.0/This is an open-access article distributed under the terms of the Creative Commons Attribution License (CC BY). The use, distribution or reproduction in other forums is permitted, provided the original author(s) and the copyright owner(s) are credited and that the original publication in this journal is cited, in accordance with accepted academic practice. No use, distribution or reproduction is permitted which does not comply with these terms.
spellingShingle Oncology
Zeng, Rui
Li, Yi
He, Dong-ming
Sun, Meng-zhu
Huang, Wen-qing
Wang, Yu-hang
Zhuo, Yu-min
Chen, Jun-jiang
Chen, Tai-heng
Guo, Jing-hui
Huang, Jun
Potassium channel-related genes are a novel prognostic signature for the tumor microenvironment of renal clear cell carcinoma
title Potassium channel-related genes are a novel prognostic signature for the tumor microenvironment of renal clear cell carcinoma
title_full Potassium channel-related genes are a novel prognostic signature for the tumor microenvironment of renal clear cell carcinoma
title_fullStr Potassium channel-related genes are a novel prognostic signature for the tumor microenvironment of renal clear cell carcinoma
title_full_unstemmed Potassium channel-related genes are a novel prognostic signature for the tumor microenvironment of renal clear cell carcinoma
title_short Potassium channel-related genes are a novel prognostic signature for the tumor microenvironment of renal clear cell carcinoma
title_sort potassium channel-related genes are a novel prognostic signature for the tumor microenvironment of renal clear cell carcinoma
topic Oncology
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9552761/
https://www.ncbi.nlm.nih.gov/pubmed/36237326
http://dx.doi.org/10.3389/fonc.2022.1013324
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