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Characterizing the prognostic and therapeutic value of necroptosis in sarcoma based on necroptosis subtypes

Necroptosis, a type of necrotic cell death independent of caspase regulation, is mainly mediated by receptor interacting serine/threonine kinase 1 (RIPK1), receptor interacting serine/threonine kinase 3 (RIPK3) and mixed lineage kinase domain-like (MLKL). Necroptosis plays an essential role in many...

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Autores principales: Ma, Yibo, Yuan, Qihang, He, Shiping, Mao, Xiulin, Zheng, Shuo, Chen, Changjian
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Frontiers Media S.A. 2022
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9552825/
https://www.ncbi.nlm.nih.gov/pubmed/36238158
http://dx.doi.org/10.3389/fgene.2022.980209
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author Ma, Yibo
Yuan, Qihang
He, Shiping
Mao, Xiulin
Zheng, Shuo
Chen, Changjian
author_facet Ma, Yibo
Yuan, Qihang
He, Shiping
Mao, Xiulin
Zheng, Shuo
Chen, Changjian
author_sort Ma, Yibo
collection PubMed
description Necroptosis, a type of necrotic cell death independent of caspase regulation, is mainly mediated by receptor interacting serine/threonine kinase 1 (RIPK1), receptor interacting serine/threonine kinase 3 (RIPK3) and mixed lineage kinase domain-like (MLKL). Necroptosis plays an essential role in many tumors. However, the potential roles of necroptosis in tumor microenvironment (TME) of sarcoma (SARC) remain unknown. This study analyzed the expression, prognosis, genetic alterations of necroptosis genes in SARC. We identified two subtypes (cluster A and B) by performing unsupervised consensus clustering. Cluster A and B greatly differed in prognosis and immune infiltration, with cluster A showing more favorable prognosis, higher immune infiltration and higher expression levels of necroptosis genes than cluster B. Based on the differentially expressed genes (DEGs) between two clusters, a necroptosis scoring system was developed for predicting overall survival of SARC patients. Patients with high necroptosis score had worse survival status, with a decreased infiltration level of most immune cells. Our findings demonstrated the potential role of necroptosis in regulating tumor microenvironment and the prognostic value of necroptosis-related genes for SARC patients.
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spelling pubmed-95528252022-10-12 Characterizing the prognostic and therapeutic value of necroptosis in sarcoma based on necroptosis subtypes Ma, Yibo Yuan, Qihang He, Shiping Mao, Xiulin Zheng, Shuo Chen, Changjian Front Genet Genetics Necroptosis, a type of necrotic cell death independent of caspase regulation, is mainly mediated by receptor interacting serine/threonine kinase 1 (RIPK1), receptor interacting serine/threonine kinase 3 (RIPK3) and mixed lineage kinase domain-like (MLKL). Necroptosis plays an essential role in many tumors. However, the potential roles of necroptosis in tumor microenvironment (TME) of sarcoma (SARC) remain unknown. This study analyzed the expression, prognosis, genetic alterations of necroptosis genes in SARC. We identified two subtypes (cluster A and B) by performing unsupervised consensus clustering. Cluster A and B greatly differed in prognosis and immune infiltration, with cluster A showing more favorable prognosis, higher immune infiltration and higher expression levels of necroptosis genes than cluster B. Based on the differentially expressed genes (DEGs) between two clusters, a necroptosis scoring system was developed for predicting overall survival of SARC patients. Patients with high necroptosis score had worse survival status, with a decreased infiltration level of most immune cells. Our findings demonstrated the potential role of necroptosis in regulating tumor microenvironment and the prognostic value of necroptosis-related genes for SARC patients. Frontiers Media S.A. 2022-09-27 /pmc/articles/PMC9552825/ /pubmed/36238158 http://dx.doi.org/10.3389/fgene.2022.980209 Text en Copyright © 2022 Ma, Yuan, He, Mao, Zheng and Chen. https://creativecommons.org/licenses/by/4.0/This is an open-access article distributed under the terms of the Creative Commons Attribution License (CC BY). The use, distribution or reproduction in other forums is permitted, provided the original author(s) and the copyright owner(s) are credited and that the original publication in this journal is cited, in accordance with accepted academic practice. No use, distribution or reproduction is permitted which does not comply with these terms.
spellingShingle Genetics
Ma, Yibo
Yuan, Qihang
He, Shiping
Mao, Xiulin
Zheng, Shuo
Chen, Changjian
Characterizing the prognostic and therapeutic value of necroptosis in sarcoma based on necroptosis subtypes
title Characterizing the prognostic and therapeutic value of necroptosis in sarcoma based on necroptosis subtypes
title_full Characterizing the prognostic and therapeutic value of necroptosis in sarcoma based on necroptosis subtypes
title_fullStr Characterizing the prognostic and therapeutic value of necroptosis in sarcoma based on necroptosis subtypes
title_full_unstemmed Characterizing the prognostic and therapeutic value of necroptosis in sarcoma based on necroptosis subtypes
title_short Characterizing the prognostic and therapeutic value of necroptosis in sarcoma based on necroptosis subtypes
title_sort characterizing the prognostic and therapeutic value of necroptosis in sarcoma based on necroptosis subtypes
topic Genetics
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9552825/
https://www.ncbi.nlm.nih.gov/pubmed/36238158
http://dx.doi.org/10.3389/fgene.2022.980209
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