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Characterization of the complete chloroplast genome of Clematis orientalis (Ranunculaceae)
The medicinal plant Clematis orientalis L. belongs to the family Ranunculaceae. In this study, we determined the complete chloroplast genome sequence of C. orientalis and its phylogenetic relationships with other species. The complete chloroplast genome of C. glauca is 159,518 bp in length, circular...
Autores principales: | , , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Taylor & Francis
2022
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9553143/ https://www.ncbi.nlm.nih.gov/pubmed/36237202 http://dx.doi.org/10.1080/23802359.2022.2127339 |
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author | Cui, Yi Yang, Lihua Ma, Bingru Ling, Shaoping Wang, Jingwen Han, Zhongming Wang, Yunhe |
author_facet | Cui, Yi Yang, Lihua Ma, Bingru Ling, Shaoping Wang, Jingwen Han, Zhongming Wang, Yunhe |
author_sort | Cui, Yi |
collection | PubMed |
description | The medicinal plant Clematis orientalis L. belongs to the family Ranunculaceae. In this study, we determined the complete chloroplast genome sequence of C. orientalis and its phylogenetic relationships with other species. The complete chloroplast genome of C. glauca is 159,518 bp in length, circular in structure, and has four regions including a large single-copy (LSC) region of 79,453 bp; a small single-copy (SSC) region of 17,997 bp; and two inverted repeat (IR) regions of 31,034 bp. The GC content of the genome is 38%, and those of LSC, SSC, and IR regions are 36.2, 31.4, and 42%, respectively. The genome encodes 129 unique genes, including 85 protein-coding genes, 36 tRNA genes, and eight rRNA genes. Phylogenomic analysis reveals that C. orientalis is most closely related to C. aethusifolia. This study contributes to better understanding of phylogenetic relationships of Ranunculaceae. |
format | Online Article Text |
id | pubmed-9553143 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2022 |
publisher | Taylor & Francis |
record_format | MEDLINE/PubMed |
spelling | pubmed-95531432022-10-12 Characterization of the complete chloroplast genome of Clematis orientalis (Ranunculaceae) Cui, Yi Yang, Lihua Ma, Bingru Ling, Shaoping Wang, Jingwen Han, Zhongming Wang, Yunhe Mitochondrial DNA B Resour Plastome Announcement The medicinal plant Clematis orientalis L. belongs to the family Ranunculaceae. In this study, we determined the complete chloroplast genome sequence of C. orientalis and its phylogenetic relationships with other species. The complete chloroplast genome of C. glauca is 159,518 bp in length, circular in structure, and has four regions including a large single-copy (LSC) region of 79,453 bp; a small single-copy (SSC) region of 17,997 bp; and two inverted repeat (IR) regions of 31,034 bp. The GC content of the genome is 38%, and those of LSC, SSC, and IR regions are 36.2, 31.4, and 42%, respectively. The genome encodes 129 unique genes, including 85 protein-coding genes, 36 tRNA genes, and eight rRNA genes. Phylogenomic analysis reveals that C. orientalis is most closely related to C. aethusifolia. This study contributes to better understanding of phylogenetic relationships of Ranunculaceae. Taylor & Francis 2022-10-06 /pmc/articles/PMC9553143/ /pubmed/36237202 http://dx.doi.org/10.1080/23802359.2022.2127339 Text en © 2022 The Author(s). Published by Informa UK Limited, trading as Taylor & Francis Group. https://creativecommons.org/licenses/by/4.0/This is an Open Access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/4.0/ (https://creativecommons.org/licenses/by/4.0/) ), which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited. |
spellingShingle | Plastome Announcement Cui, Yi Yang, Lihua Ma, Bingru Ling, Shaoping Wang, Jingwen Han, Zhongming Wang, Yunhe Characterization of the complete chloroplast genome of Clematis orientalis (Ranunculaceae) |
title | Characterization of the complete chloroplast genome of Clematis orientalis (Ranunculaceae) |
title_full | Characterization of the complete chloroplast genome of Clematis orientalis (Ranunculaceae) |
title_fullStr | Characterization of the complete chloroplast genome of Clematis orientalis (Ranunculaceae) |
title_full_unstemmed | Characterization of the complete chloroplast genome of Clematis orientalis (Ranunculaceae) |
title_short | Characterization of the complete chloroplast genome of Clematis orientalis (Ranunculaceae) |
title_sort | characterization of the complete chloroplast genome of clematis orientalis (ranunculaceae) |
topic | Plastome Announcement |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9553143/ https://www.ncbi.nlm.nih.gov/pubmed/36237202 http://dx.doi.org/10.1080/23802359.2022.2127339 |
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