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Characterization of the complete Salix viminalis var. gmelinii Turcz 1854 chloroplast genome from the northeast of China
The Salix viminalis var. gmelinii Turcz 1854 is a variant of the Salix genus, from the Salicaceae family, and possesses an extremely high economic value. In this study the complete chloroplast genome of the woody plant S. viminalis var. gmelinii was characterized for the first time using a high-thro...
Autores principales: | , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Taylor & Francis
2022
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9553155/ https://www.ncbi.nlm.nih.gov/pubmed/36237206 http://dx.doi.org/10.1080/23802359.2022.2127337 |
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author | Wan, Jie Tang, Huijie Yu, Zicheng Wang, Jing Yao, Xu Li, Xiaoping |
author_facet | Wan, Jie Tang, Huijie Yu, Zicheng Wang, Jing Yao, Xu Li, Xiaoping |
author_sort | Wan, Jie |
collection | PubMed |
description | The Salix viminalis var. gmelinii Turcz 1854 is a variant of the Salix genus, from the Salicaceae family, and possesses an extremely high economic value. In this study the complete chloroplast genome of the woody plant S. viminalis var. gmelinii was characterized for the first time using a high-throughput approach in conjunction with de novo assembly technology. The S.viminalis var. gmelinii chloroplast genome is 155,405 base pairs (bp) in length and contains 36.71% GC content. It incorporates a large single-copy region (LSC, 84,287bp) alongside one small-copy region (SSC, 16,198bp), and two inverted repeat regions (IRA and IRB, 27,460bp). Moreover, this chloroplast genome encodes 128 genes, which comprises 83 protein-coding genes, 37 transfer RNA (tRNA) genes, and eight ribosomal RNA (rRNA) genes. Furthermore, the phylogenetic analysis revealed that S.viminalis var. gmelinii is closely related to S. cupularis and S.gordejevii. |
format | Online Article Text |
id | pubmed-9553155 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2022 |
publisher | Taylor & Francis |
record_format | MEDLINE/PubMed |
spelling | pubmed-95531552022-10-12 Characterization of the complete Salix viminalis var. gmelinii Turcz 1854 chloroplast genome from the northeast of China Wan, Jie Tang, Huijie Yu, Zicheng Wang, Jing Yao, Xu Li, Xiaoping Mitochondrial DNA B Resour Mitogenome Announcement The Salix viminalis var. gmelinii Turcz 1854 is a variant of the Salix genus, from the Salicaceae family, and possesses an extremely high economic value. In this study the complete chloroplast genome of the woody plant S. viminalis var. gmelinii was characterized for the first time using a high-throughput approach in conjunction with de novo assembly technology. The S.viminalis var. gmelinii chloroplast genome is 155,405 base pairs (bp) in length and contains 36.71% GC content. It incorporates a large single-copy region (LSC, 84,287bp) alongside one small-copy region (SSC, 16,198bp), and two inverted repeat regions (IRA and IRB, 27,460bp). Moreover, this chloroplast genome encodes 128 genes, which comprises 83 protein-coding genes, 37 transfer RNA (tRNA) genes, and eight ribosomal RNA (rRNA) genes. Furthermore, the phylogenetic analysis revealed that S.viminalis var. gmelinii is closely related to S. cupularis and S.gordejevii. Taylor & Francis 2022-10-06 /pmc/articles/PMC9553155/ /pubmed/36237206 http://dx.doi.org/10.1080/23802359.2022.2127337 Text en © 2022 The Author(s). Published by Informa UK Limited, trading as Taylor & Francis Group. https://creativecommons.org/licenses/by/4.0/This is an Open Access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/4.0/ (https://creativecommons.org/licenses/by/4.0/) ), which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited. |
spellingShingle | Mitogenome Announcement Wan, Jie Tang, Huijie Yu, Zicheng Wang, Jing Yao, Xu Li, Xiaoping Characterization of the complete Salix viminalis var. gmelinii Turcz 1854 chloroplast genome from the northeast of China |
title | Characterization of the complete Salix viminalis var. gmelinii Turcz 1854 chloroplast genome from the northeast of China |
title_full | Characterization of the complete Salix viminalis var. gmelinii Turcz 1854 chloroplast genome from the northeast of China |
title_fullStr | Characterization of the complete Salix viminalis var. gmelinii Turcz 1854 chloroplast genome from the northeast of China |
title_full_unstemmed | Characterization of the complete Salix viminalis var. gmelinii Turcz 1854 chloroplast genome from the northeast of China |
title_short | Characterization of the complete Salix viminalis var. gmelinii Turcz 1854 chloroplast genome from the northeast of China |
title_sort | characterization of the complete salix viminalis var. gmelinii turcz 1854 chloroplast genome from the northeast of china |
topic | Mitogenome Announcement |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9553155/ https://www.ncbi.nlm.nih.gov/pubmed/36237206 http://dx.doi.org/10.1080/23802359.2022.2127337 |
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