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Characterization of the complete Salix viminalis var. gmelinii Turcz 1854 chloroplast genome from the northeast of China

The Salix viminalis var. gmelinii Turcz 1854 is a variant of the Salix genus, from the Salicaceae family, and possesses an extremely high economic value. In this study the complete chloroplast genome of the woody plant S. viminalis var. gmelinii was characterized for the first time using a high-thro...

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Autores principales: Wan, Jie, Tang, Huijie, Yu, Zicheng, Wang, Jing, Yao, Xu, Li, Xiaoping
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Taylor & Francis 2022
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9553155/
https://www.ncbi.nlm.nih.gov/pubmed/36237206
http://dx.doi.org/10.1080/23802359.2022.2127337
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author Wan, Jie
Tang, Huijie
Yu, Zicheng
Wang, Jing
Yao, Xu
Li, Xiaoping
author_facet Wan, Jie
Tang, Huijie
Yu, Zicheng
Wang, Jing
Yao, Xu
Li, Xiaoping
author_sort Wan, Jie
collection PubMed
description The Salix viminalis var. gmelinii Turcz 1854 is a variant of the Salix genus, from the Salicaceae family, and possesses an extremely high economic value. In this study the complete chloroplast genome of the woody plant S. viminalis var. gmelinii was characterized for the first time using a high-throughput approach in conjunction with de novo assembly technology. The S.viminalis var. gmelinii chloroplast genome is 155,405 base pairs (bp) in length and contains 36.71% GC content. It incorporates a large single-copy region (LSC, 84,287bp) alongside one small-copy region (SSC, 16,198bp), and two inverted repeat regions (IRA and IRB, 27,460bp). Moreover, this chloroplast genome encodes 128 genes, which comprises 83 protein-coding genes, 37 transfer RNA (tRNA) genes, and eight ribosomal RNA (rRNA) genes. Furthermore, the phylogenetic analysis revealed that S.viminalis var. gmelinii is closely related to S. cupularis and S.gordejevii.
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spelling pubmed-95531552022-10-12 Characterization of the complete Salix viminalis var. gmelinii Turcz 1854 chloroplast genome from the northeast of China Wan, Jie Tang, Huijie Yu, Zicheng Wang, Jing Yao, Xu Li, Xiaoping Mitochondrial DNA B Resour Mitogenome Announcement The Salix viminalis var. gmelinii Turcz 1854 is a variant of the Salix genus, from the Salicaceae family, and possesses an extremely high economic value. In this study the complete chloroplast genome of the woody plant S. viminalis var. gmelinii was characterized for the first time using a high-throughput approach in conjunction with de novo assembly technology. The S.viminalis var. gmelinii chloroplast genome is 155,405 base pairs (bp) in length and contains 36.71% GC content. It incorporates a large single-copy region (LSC, 84,287bp) alongside one small-copy region (SSC, 16,198bp), and two inverted repeat regions (IRA and IRB, 27,460bp). Moreover, this chloroplast genome encodes 128 genes, which comprises 83 protein-coding genes, 37 transfer RNA (tRNA) genes, and eight ribosomal RNA (rRNA) genes. Furthermore, the phylogenetic analysis revealed that S.viminalis var. gmelinii is closely related to S. cupularis and S.gordejevii. Taylor & Francis 2022-10-06 /pmc/articles/PMC9553155/ /pubmed/36237206 http://dx.doi.org/10.1080/23802359.2022.2127337 Text en © 2022 The Author(s). Published by Informa UK Limited, trading as Taylor & Francis Group. https://creativecommons.org/licenses/by/4.0/This is an Open Access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/4.0/ (https://creativecommons.org/licenses/by/4.0/) ), which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited.
spellingShingle Mitogenome Announcement
Wan, Jie
Tang, Huijie
Yu, Zicheng
Wang, Jing
Yao, Xu
Li, Xiaoping
Characterization of the complete Salix viminalis var. gmelinii Turcz 1854 chloroplast genome from the northeast of China
title Characterization of the complete Salix viminalis var. gmelinii Turcz 1854 chloroplast genome from the northeast of China
title_full Characterization of the complete Salix viminalis var. gmelinii Turcz 1854 chloroplast genome from the northeast of China
title_fullStr Characterization of the complete Salix viminalis var. gmelinii Turcz 1854 chloroplast genome from the northeast of China
title_full_unstemmed Characterization of the complete Salix viminalis var. gmelinii Turcz 1854 chloroplast genome from the northeast of China
title_short Characterization of the complete Salix viminalis var. gmelinii Turcz 1854 chloroplast genome from the northeast of China
title_sort characterization of the complete salix viminalis var. gmelinii turcz 1854 chloroplast genome from the northeast of china
topic Mitogenome Announcement
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9553155/
https://www.ncbi.nlm.nih.gov/pubmed/36237206
http://dx.doi.org/10.1080/23802359.2022.2127337
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