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Construction of Prognostic Risk Model for Small Cell Lung Cancer Based on Immune-Related Genes
Small cell lung cancer (SCLC) is a highly invasive and fatal malignancy. Research at the present stage implied that the expression of immune-related genes is associated with the prognosis in SCLC. Accordingly, it is essential to explore effective immune-related molecular markers to judge prognosis a...
Autores principales: | , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Hindawi
2022
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9554662/ https://www.ncbi.nlm.nih.gov/pubmed/36245844 http://dx.doi.org/10.1155/2022/7116080 |
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author | Deng, Feng Tao, Feng Xu, Zhili Zhou, Jun Gong, Xiaowei Zhang, Ruhu |
author_facet | Deng, Feng Tao, Feng Xu, Zhili Zhou, Jun Gong, Xiaowei Zhang, Ruhu |
author_sort | Deng, Feng |
collection | PubMed |
description | Small cell lung cancer (SCLC) is a highly invasive and fatal malignancy. Research at the present stage implied that the expression of immune-related genes is associated with the prognosis in SCLC. Accordingly, it is essential to explore effective immune-related molecular markers to judge prognosis and treat SCLC. Our research obtained SCLC dataset from Gene Expression Omnibus (GEO) and subjected mRNAs in it to differential expression analysis. Differentially expressed mRNAs (DEmRNAs) were intersected with immune-related genes to yield immune-related differentially expressed genes (DEGs). The functions of these DEGs were revealed by Gene Ontology (GO) and Kyoto Encyclopedia of Genes and Genomes (KEGG) enrichment analyses. Thereafter, we categorized 3 subtypes of immune-related DEGs via K-means clustering. Kaplan-Meier curves analyzed the effects of 3 subtypes on SCLC patients' survival. Single-sample gene set enrichment analysis (ssGSEA) and ESTIMATE validated that the activation of different immune gene subtypes differed significantly. Finally, an immune-related-7-gene assessment model was constructed by univariate-Lasso-multiple Cox regression analyses. Riskscores, Kaplan-Meier curves, receiver operating characteristic (ROC) curves, and independent prognostic analyses validated the prognostic value of the immune-related-7-gene assessment model. As suggested by GSEA, there was a prominent difference in cytokine-related pathways between high- and low-risk groups. As the analysis went further, we discovered a statistically significant difference in the expression of human leukocyte antigen (HLA) proteins and costimulatory molecules expressed on the surface of CD274, CD152, and T lymphocytes in different groups. In a word, we started with immune-related genes to construct the prognostic model for SCLC, which could effectively evaluate the clinical outcomes and offer guidance for the treatment and prognosis of SCLC patients. |
format | Online Article Text |
id | pubmed-9554662 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2022 |
publisher | Hindawi |
record_format | MEDLINE/PubMed |
spelling | pubmed-95546622022-10-13 Construction of Prognostic Risk Model for Small Cell Lung Cancer Based on Immune-Related Genes Deng, Feng Tao, Feng Xu, Zhili Zhou, Jun Gong, Xiaowei Zhang, Ruhu Comput Math Methods Med Research Article Small cell lung cancer (SCLC) is a highly invasive and fatal malignancy. Research at the present stage implied that the expression of immune-related genes is associated with the prognosis in SCLC. Accordingly, it is essential to explore effective immune-related molecular markers to judge prognosis and treat SCLC. Our research obtained SCLC dataset from Gene Expression Omnibus (GEO) and subjected mRNAs in it to differential expression analysis. Differentially expressed mRNAs (DEmRNAs) were intersected with immune-related genes to yield immune-related differentially expressed genes (DEGs). The functions of these DEGs were revealed by Gene Ontology (GO) and Kyoto Encyclopedia of Genes and Genomes (KEGG) enrichment analyses. Thereafter, we categorized 3 subtypes of immune-related DEGs via K-means clustering. Kaplan-Meier curves analyzed the effects of 3 subtypes on SCLC patients' survival. Single-sample gene set enrichment analysis (ssGSEA) and ESTIMATE validated that the activation of different immune gene subtypes differed significantly. Finally, an immune-related-7-gene assessment model was constructed by univariate-Lasso-multiple Cox regression analyses. Riskscores, Kaplan-Meier curves, receiver operating characteristic (ROC) curves, and independent prognostic analyses validated the prognostic value of the immune-related-7-gene assessment model. As suggested by GSEA, there was a prominent difference in cytokine-related pathways between high- and low-risk groups. As the analysis went further, we discovered a statistically significant difference in the expression of human leukocyte antigen (HLA) proteins and costimulatory molecules expressed on the surface of CD274, CD152, and T lymphocytes in different groups. In a word, we started with immune-related genes to construct the prognostic model for SCLC, which could effectively evaluate the clinical outcomes and offer guidance for the treatment and prognosis of SCLC patients. Hindawi 2022-09-30 /pmc/articles/PMC9554662/ /pubmed/36245844 http://dx.doi.org/10.1155/2022/7116080 Text en Copyright © 2022 Feng Deng et al. https://creativecommons.org/licenses/by/4.0/This is an open access article distributed under the Creative Commons Attribution License, which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited. |
spellingShingle | Research Article Deng, Feng Tao, Feng Xu, Zhili Zhou, Jun Gong, Xiaowei Zhang, Ruhu Construction of Prognostic Risk Model for Small Cell Lung Cancer Based on Immune-Related Genes |
title | Construction of Prognostic Risk Model for Small Cell Lung Cancer Based on Immune-Related Genes |
title_full | Construction of Prognostic Risk Model for Small Cell Lung Cancer Based on Immune-Related Genes |
title_fullStr | Construction of Prognostic Risk Model for Small Cell Lung Cancer Based on Immune-Related Genes |
title_full_unstemmed | Construction of Prognostic Risk Model for Small Cell Lung Cancer Based on Immune-Related Genes |
title_short | Construction of Prognostic Risk Model for Small Cell Lung Cancer Based on Immune-Related Genes |
title_sort | construction of prognostic risk model for small cell lung cancer based on immune-related genes |
topic | Research Article |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9554662/ https://www.ncbi.nlm.nih.gov/pubmed/36245844 http://dx.doi.org/10.1155/2022/7116080 |
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