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Epitope vaccine design for Toxoplasma gondii based on a genome-wide database of membrane proteins
BACKGROUND: There is presently no effective and safe vaccine for Toxoplasma gondii for humans. The study described here was designed to search for a novel group of optimal B cell and T cell epitopes from Toxoplasma membrane proteins using genome-wide comprehensive screening. METHODS: The amino acid...
Autores principales: | , , , , , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
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BioMed Central
2022
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9555269/ https://www.ncbi.nlm.nih.gov/pubmed/36224608 http://dx.doi.org/10.1186/s13071-022-05497-z |
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author | Li, Xuan-Wu Zhang, Ni Li, Zhuo-Lin Dibo, Nouhoum Ma, Zhen-Rong Lu, Bin Huang, Ye-Hong Chang, Yun-Feng Chen, Hong-Zhi Wu, Xiang |
author_facet | Li, Xuan-Wu Zhang, Ni Li, Zhuo-Lin Dibo, Nouhoum Ma, Zhen-Rong Lu, Bin Huang, Ye-Hong Chang, Yun-Feng Chen, Hong-Zhi Wu, Xiang |
author_sort | Li, Xuan-Wu |
collection | PubMed |
description | BACKGROUND: There is presently no effective and safe vaccine for Toxoplasma gondii for humans. The study described here was designed to search for a novel group of optimal B cell and T cell epitopes from Toxoplasma membrane proteins using genome-wide comprehensive screening. METHODS: The amino acid sequences of membrane proteins of T. gondii were obtained from the UniProt database. The ABCPred and BepiPred servers were employed to predict the linear B cell epitopes. The Immune Epitope Database (IEDB) online service was utilized to forecast T cell epitopes within T. gondii membrane proteins that bind to human leukocyte antigen (HLA) class I (HLA-I) or HLA-II molecules. RESULTS: From the 314 membrane proteins of T. gondii, a total of 14 linear B cell epitopes embedded in 12 membrane proteins were identified. Eight epitopes for major histocompatibility complex (MHC) class I (MHC-I) molecules and 18 epitopes for MHC-II molecules were ultimately selected, for which world population coverage percentiles were 71.94% and 99.76%, respectively. The top rated combinations of linear B cell epitopes and T cell epitopes covering both BALB/c mice and a majority of the human population were identified for the development of a protective vaccine. CONCLUSIONS: The ultimate vaccine construct described here, which comprises B cells, MHC-I and MHC-II epitopes, might protect individuals against T. gondii infection by inducing humoral and cellular immune responses. GRAPHIC ABSTRACT: [Image: see text] SUPPLEMENTARY INFORMATION: The online version contains supplementary material and is available at 10.1186/s13071-022-05497-z. |
format | Online Article Text |
id | pubmed-9555269 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2022 |
publisher | BioMed Central |
record_format | MEDLINE/PubMed |
spelling | pubmed-95552692022-10-12 Epitope vaccine design for Toxoplasma gondii based on a genome-wide database of membrane proteins Li, Xuan-Wu Zhang, Ni Li, Zhuo-Lin Dibo, Nouhoum Ma, Zhen-Rong Lu, Bin Huang, Ye-Hong Chang, Yun-Feng Chen, Hong-Zhi Wu, Xiang Parasit Vectors Brief Report BACKGROUND: There is presently no effective and safe vaccine for Toxoplasma gondii for humans. The study described here was designed to search for a novel group of optimal B cell and T cell epitopes from Toxoplasma membrane proteins using genome-wide comprehensive screening. METHODS: The amino acid sequences of membrane proteins of T. gondii were obtained from the UniProt database. The ABCPred and BepiPred servers were employed to predict the linear B cell epitopes. The Immune Epitope Database (IEDB) online service was utilized to forecast T cell epitopes within T. gondii membrane proteins that bind to human leukocyte antigen (HLA) class I (HLA-I) or HLA-II molecules. RESULTS: From the 314 membrane proteins of T. gondii, a total of 14 linear B cell epitopes embedded in 12 membrane proteins were identified. Eight epitopes for major histocompatibility complex (MHC) class I (MHC-I) molecules and 18 epitopes for MHC-II molecules were ultimately selected, for which world population coverage percentiles were 71.94% and 99.76%, respectively. The top rated combinations of linear B cell epitopes and T cell epitopes covering both BALB/c mice and a majority of the human population were identified for the development of a protective vaccine. CONCLUSIONS: The ultimate vaccine construct described here, which comprises B cells, MHC-I and MHC-II epitopes, might protect individuals against T. gondii infection by inducing humoral and cellular immune responses. GRAPHIC ABSTRACT: [Image: see text] SUPPLEMENTARY INFORMATION: The online version contains supplementary material and is available at 10.1186/s13071-022-05497-z. BioMed Central 2022-10-12 /pmc/articles/PMC9555269/ /pubmed/36224608 http://dx.doi.org/10.1186/s13071-022-05497-z Text en © The Author(s) 2022 https://creativecommons.org/licenses/by/4.0/Open AccessThis article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons licence, and indicate if changes were made. The images or other third party material in this article are included in the article's Creative Commons licence, unless indicated otherwise in a credit line to the material. If material is not included in the article's Creative Commons licence and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this licence, visit http://creativecommons.org/licenses/by/4.0/ (https://creativecommons.org/licenses/by/4.0/) . The Creative Commons Public Domain Dedication waiver (http://creativecommons.org/publicdomain/zero/1.0/ (https://creativecommons.org/publicdomain/zero/1.0/) ) applies to the data made available in this article, unless otherwise stated in a credit line to the data. |
spellingShingle | Brief Report Li, Xuan-Wu Zhang, Ni Li, Zhuo-Lin Dibo, Nouhoum Ma, Zhen-Rong Lu, Bin Huang, Ye-Hong Chang, Yun-Feng Chen, Hong-Zhi Wu, Xiang Epitope vaccine design for Toxoplasma gondii based on a genome-wide database of membrane proteins |
title | Epitope vaccine design for Toxoplasma gondii based on a genome-wide database of membrane proteins |
title_full | Epitope vaccine design for Toxoplasma gondii based on a genome-wide database of membrane proteins |
title_fullStr | Epitope vaccine design for Toxoplasma gondii based on a genome-wide database of membrane proteins |
title_full_unstemmed | Epitope vaccine design for Toxoplasma gondii based on a genome-wide database of membrane proteins |
title_short | Epitope vaccine design for Toxoplasma gondii based on a genome-wide database of membrane proteins |
title_sort | epitope vaccine design for toxoplasma gondii based on a genome-wide database of membrane proteins |
topic | Brief Report |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9555269/ https://www.ncbi.nlm.nih.gov/pubmed/36224608 http://dx.doi.org/10.1186/s13071-022-05497-z |
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