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Tumor immune cell infiltration score based model predicts prognosis in multiple myeloma
The tumor microenvironment plays an important role in various processes, including tumorigenesis, cancer progression, and metastasis. Immune signatures have been identified and verified for use in diagnosis and prognosis prediction. We used single-sample Gene Set Enrichment Analysis to evaluate tumo...
Autores principales: | , , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Nature Publishing Group UK
2022
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9556830/ https://www.ncbi.nlm.nih.gov/pubmed/36224246 http://dx.doi.org/10.1038/s41598-022-21763-7 |
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author | Chen, Can Li, Yiwei Miao, Peiwen Xu, Ying Xie, Yaping Chen, Zhenzhen Qian, Shenxian |
author_facet | Chen, Can Li, Yiwei Miao, Peiwen Xu, Ying Xie, Yaping Chen, Zhenzhen Qian, Shenxian |
author_sort | Chen, Can |
collection | PubMed |
description | The tumor microenvironment plays an important role in various processes, including tumorigenesis, cancer progression, and metastasis. Immune signatures have been identified and verified for use in diagnosis and prognosis prediction. We used single-sample Gene Set Enrichment Analysis to evaluate tumor immune cell infiltration score (TIICs) and verify their prognostic significance in both training and validation cohorts and using this information to build a prognostic model. A total of 1281 samples were obtained for further evaluation of the immune enrichment scores of 28 immune cells, showing that Th17 cell contributed most significantly to survival. Using the median TIICs as a cutoff to divide the samples into two groups, we found that the high-TIICs group was associated with favorable outcomes in both the training and validation sets. We then constructed a prognostic model to predict the 6, 8, and 10-year survival outcomes. Further analysis showed that immune score and tumor purity were higher in the high-TIICs group, while the matrix score was lower in this group. Forty-two differentially expressed genes were identified between the two groups. This new prognostic model based on immune cell infiltration indicates the potential for TIICs in predicting prognosis and as targets for treatment. |
format | Online Article Text |
id | pubmed-9556830 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2022 |
publisher | Nature Publishing Group UK |
record_format | MEDLINE/PubMed |
spelling | pubmed-95568302022-10-14 Tumor immune cell infiltration score based model predicts prognosis in multiple myeloma Chen, Can Li, Yiwei Miao, Peiwen Xu, Ying Xie, Yaping Chen, Zhenzhen Qian, Shenxian Sci Rep Article The tumor microenvironment plays an important role in various processes, including tumorigenesis, cancer progression, and metastasis. Immune signatures have been identified and verified for use in diagnosis and prognosis prediction. We used single-sample Gene Set Enrichment Analysis to evaluate tumor immune cell infiltration score (TIICs) and verify their prognostic significance in both training and validation cohorts and using this information to build a prognostic model. A total of 1281 samples were obtained for further evaluation of the immune enrichment scores of 28 immune cells, showing that Th17 cell contributed most significantly to survival. Using the median TIICs as a cutoff to divide the samples into two groups, we found that the high-TIICs group was associated with favorable outcomes in both the training and validation sets. We then constructed a prognostic model to predict the 6, 8, and 10-year survival outcomes. Further analysis showed that immune score and tumor purity were higher in the high-TIICs group, while the matrix score was lower in this group. Forty-two differentially expressed genes were identified between the two groups. This new prognostic model based on immune cell infiltration indicates the potential for TIICs in predicting prognosis and as targets for treatment. Nature Publishing Group UK 2022-10-12 /pmc/articles/PMC9556830/ /pubmed/36224246 http://dx.doi.org/10.1038/s41598-022-21763-7 Text en © The Author(s) 2022 https://creativecommons.org/licenses/by/4.0/Open Access This article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons licence, and indicate if changes were made. The images or other third party material in this article are included in the article's Creative Commons licence, unless indicated otherwise in a credit line to the material. If material is not included in the article's Creative Commons licence and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this licence, visit http://creativecommons.org/licenses/by/4.0/ (https://creativecommons.org/licenses/by/4.0/) . |
spellingShingle | Article Chen, Can Li, Yiwei Miao, Peiwen Xu, Ying Xie, Yaping Chen, Zhenzhen Qian, Shenxian Tumor immune cell infiltration score based model predicts prognosis in multiple myeloma |
title | Tumor immune cell infiltration score based model predicts prognosis in multiple myeloma |
title_full | Tumor immune cell infiltration score based model predicts prognosis in multiple myeloma |
title_fullStr | Tumor immune cell infiltration score based model predicts prognosis in multiple myeloma |
title_full_unstemmed | Tumor immune cell infiltration score based model predicts prognosis in multiple myeloma |
title_short | Tumor immune cell infiltration score based model predicts prognosis in multiple myeloma |
title_sort | tumor immune cell infiltration score based model predicts prognosis in multiple myeloma |
topic | Article |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9556830/ https://www.ncbi.nlm.nih.gov/pubmed/36224246 http://dx.doi.org/10.1038/s41598-022-21763-7 |
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