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Analysis and identification of the necroptosis landscape on therapy and prognosis in bladder cancer
Bladder cancer (BLCA) is one of the most common malignant tumors of the urinary system, but the current therapeutic strategy based on chemotherapy and immune checkpoint inhibitor (ICI) therapy cannot meet the treatment needs, mainly owing to the endogenous or acquired apoptotic resistance of cancer...
Autores principales: | , , , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
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Frontiers Media S.A.
2022
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9557096/ https://www.ncbi.nlm.nih.gov/pubmed/36246597 http://dx.doi.org/10.3389/fgene.2022.919829 |
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author | Zhao, Zihan Jiang, Ning Zhang, Yulin Bai, Yuhao Liu, Tianyao Li, Tianhang Guo, Hongqian Yang, Rong |
author_facet | Zhao, Zihan Jiang, Ning Zhang, Yulin Bai, Yuhao Liu, Tianyao Li, Tianhang Guo, Hongqian Yang, Rong |
author_sort | Zhao, Zihan |
collection | PubMed |
description | Bladder cancer (BLCA) is one of the most common malignant tumors of the urinary system, but the current therapeutic strategy based on chemotherapy and immune checkpoint inhibitor (ICI) therapy cannot meet the treatment needs, mainly owing to the endogenous or acquired apoptotic resistance of cancer cells. Targeting necroptosis provides a novel strategy for chemotherapy and targeted drugs and improves the efficacy of ICIs because of strong immunogenicity of necroptosis. Therefore, we systemically analyzed the necroptosis landscape on therapy and prognosis in BLCA. We first divided BLCA patients from The Cancer Genome Atlas (TCGA) database into two necroptosis-related clusters (C1 and C2). Necroptosis C2 showed a significantly better prognosis than C1, and the differential genes of C2 and C1 were mainly related to the immune response according to GO and KEGG analyses. Next, we constructed a novel necroptosis-related gene (NRG) signature consisting of SIRT6, FASN, GNLY, FNDC4, SRC, ANXA1, AIM2, and IKBKB to predict the survival of TCGA-BLCA cohort, and the accuracy of the NRG score was also verified by external datasets. In addition, a nomogram combining NRG score and several clinicopathological features was established to more accurately and conveniently predict the BLCA patient’s survival. We also found that the NRG score was significantly related to the infiltration levels of CD8 T cells, NK cells, and iDC cells, the gene expression of CTLA4, PD-1, TIGIT, and LAG3 of TME, and the sensitivity to chemotherapy and targeted agents in BLCA patients. In conclusion, the NRG score has an excellent performance in evaluating the prognosis, clinicopathologic features, tumor microenvironment (TME), and therapeutic sensitivity of BLCA patients, which could be utilized as a guide for chemotherapy, ICI therapy, and combination therapy. |
format | Online Article Text |
id | pubmed-9557096 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2022 |
publisher | Frontiers Media S.A. |
record_format | MEDLINE/PubMed |
spelling | pubmed-95570962022-10-14 Analysis and identification of the necroptosis landscape on therapy and prognosis in bladder cancer Zhao, Zihan Jiang, Ning Zhang, Yulin Bai, Yuhao Liu, Tianyao Li, Tianhang Guo, Hongqian Yang, Rong Front Genet Genetics Bladder cancer (BLCA) is one of the most common malignant tumors of the urinary system, but the current therapeutic strategy based on chemotherapy and immune checkpoint inhibitor (ICI) therapy cannot meet the treatment needs, mainly owing to the endogenous or acquired apoptotic resistance of cancer cells. Targeting necroptosis provides a novel strategy for chemotherapy and targeted drugs and improves the efficacy of ICIs because of strong immunogenicity of necroptosis. Therefore, we systemically analyzed the necroptosis landscape on therapy and prognosis in BLCA. We first divided BLCA patients from The Cancer Genome Atlas (TCGA) database into two necroptosis-related clusters (C1 and C2). Necroptosis C2 showed a significantly better prognosis than C1, and the differential genes of C2 and C1 were mainly related to the immune response according to GO and KEGG analyses. Next, we constructed a novel necroptosis-related gene (NRG) signature consisting of SIRT6, FASN, GNLY, FNDC4, SRC, ANXA1, AIM2, and IKBKB to predict the survival of TCGA-BLCA cohort, and the accuracy of the NRG score was also verified by external datasets. In addition, a nomogram combining NRG score and several clinicopathological features was established to more accurately and conveniently predict the BLCA patient’s survival. We also found that the NRG score was significantly related to the infiltration levels of CD8 T cells, NK cells, and iDC cells, the gene expression of CTLA4, PD-1, TIGIT, and LAG3 of TME, and the sensitivity to chemotherapy and targeted agents in BLCA patients. In conclusion, the NRG score has an excellent performance in evaluating the prognosis, clinicopathologic features, tumor microenvironment (TME), and therapeutic sensitivity of BLCA patients, which could be utilized as a guide for chemotherapy, ICI therapy, and combination therapy. Frontiers Media S.A. 2022-09-29 /pmc/articles/PMC9557096/ /pubmed/36246597 http://dx.doi.org/10.3389/fgene.2022.919829 Text en Copyright © 2022 Zhao, Jiang, Zhang, Bai, Liu, Li, Guo and Yang. https://creativecommons.org/licenses/by/4.0/This is an open-access article distributed under the terms of the Creative Commons Attribution License (CC BY). The use, distribution or reproduction in other forums is permitted, provided the original author(s) and the copyright owner(s) are credited and that the original publication in this journal is cited, in accordance with accepted academic practice. No use, distribution or reproduction is permitted which does not comply with these terms. |
spellingShingle | Genetics Zhao, Zihan Jiang, Ning Zhang, Yulin Bai, Yuhao Liu, Tianyao Li, Tianhang Guo, Hongqian Yang, Rong Analysis and identification of the necroptosis landscape on therapy and prognosis in bladder cancer |
title | Analysis and identification of the necroptosis landscape on therapy and prognosis in bladder cancer |
title_full | Analysis and identification of the necroptosis landscape on therapy and prognosis in bladder cancer |
title_fullStr | Analysis and identification of the necroptosis landscape on therapy and prognosis in bladder cancer |
title_full_unstemmed | Analysis and identification of the necroptosis landscape on therapy and prognosis in bladder cancer |
title_short | Analysis and identification of the necroptosis landscape on therapy and prognosis in bladder cancer |
title_sort | analysis and identification of the necroptosis landscape on therapy and prognosis in bladder cancer |
topic | Genetics |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9557096/ https://www.ncbi.nlm.nih.gov/pubmed/36246597 http://dx.doi.org/10.3389/fgene.2022.919829 |
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