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The third international hackathon for applying insights into large-scale genomic composition to use cases in a wide range of organisms
In October 2021, 59 scientists from 14 countries and 13 U.S. states collaborated virtually in the Third Annual Baylor College of Medicine & DNANexus Structural Variation hackathon. The goal of the hackathon was to advance research on structural variants (SVs) by prototyping and iterating on open...
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| Formato: | Online Artículo Texto |
| Lenguaje: | English |
| Publicado: |
F1000 Research Limited
2022
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| Materias: | |
| Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9557141/ https://www.ncbi.nlm.nih.gov/pubmed/36262335 http://dx.doi.org/10.12688/f1000research.110194.1 |
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| author | Walker, Kimberly Kalra, Divya Lowdon, Rebecca Chen, Guangyi Molik, David Soto, Daniela C. Dabbaghie, Fawaz Khleifat, Ahmad Al Mahmoud, Medhat Paulin, Luis F Raza, Muhammad Sohail Pfeifer, Susanne P. Agustinho, Daniel Paiva Aliyev, Elbay Avdeyev, Pavel Barrozo, Enrico R. Behera, Sairam Billingsley, Kimberley Chong, Li Chuin Choubey, Deepak De Coster, Wouter Fu, Yilei Gener, Alejandro R. Hefferon, Timothy Henke, David Morgan Höps, Wolfram Illarionova, Anastasia Jochum, Michael D. Jose, Maria Kesharwani, Rupesh K. Kolora, Sree Rohit Raj Kubica, Jędrzej Lakra, Priya Lattimer, Damaris Liew, Chia-Sin Lo, Bai-Wei Lo, Chunhsuan Lötter, Anneri Majidian, Sina Mendem, Suresh Kumar Mondal, Rajarshi Ohmiya, Hiroko Parvin, Nasrin Peralta, Carolina Poon, Chi-Lam Prabhakaran, Ramanandan Saitou, Marie Sammi, Aditi Sanio, Philippe Sapoval, Nicolae Syed, Najeeb Treangen, Todd Wang, Gaojianyong Xu, Tiancheng Yang, Jianzhi Zhang, Shangzhe Zhou, Weiyu Sedlazeck, Fritz J Busby, Ben |
| author_facet | Walker, Kimberly Kalra, Divya Lowdon, Rebecca Chen, Guangyi Molik, David Soto, Daniela C. Dabbaghie, Fawaz Khleifat, Ahmad Al Mahmoud, Medhat Paulin, Luis F Raza, Muhammad Sohail Pfeifer, Susanne P. Agustinho, Daniel Paiva Aliyev, Elbay Avdeyev, Pavel Barrozo, Enrico R. Behera, Sairam Billingsley, Kimberley Chong, Li Chuin Choubey, Deepak De Coster, Wouter Fu, Yilei Gener, Alejandro R. Hefferon, Timothy Henke, David Morgan Höps, Wolfram Illarionova, Anastasia Jochum, Michael D. Jose, Maria Kesharwani, Rupesh K. Kolora, Sree Rohit Raj Kubica, Jędrzej Lakra, Priya Lattimer, Damaris Liew, Chia-Sin Lo, Bai-Wei Lo, Chunhsuan Lötter, Anneri Majidian, Sina Mendem, Suresh Kumar Mondal, Rajarshi Ohmiya, Hiroko Parvin, Nasrin Peralta, Carolina Poon, Chi-Lam Prabhakaran, Ramanandan Saitou, Marie Sammi, Aditi Sanio, Philippe Sapoval, Nicolae Syed, Najeeb Treangen, Todd Wang, Gaojianyong Xu, Tiancheng Yang, Jianzhi Zhang, Shangzhe Zhou, Weiyu Sedlazeck, Fritz J Busby, Ben |
| author_sort | Walker, Kimberly |
| collection | PubMed |
| description | In October 2021, 59 scientists from 14 countries and 13 U.S. states collaborated virtually in the Third Annual Baylor College of Medicine & DNANexus Structural Variation hackathon. The goal of the hackathon was to advance research on structural variants (SVs) by prototyping and iterating on open-source software. This led to nine hackathon projects focused on diverse genomics research interests, including various SV discovery and genotyping methods, SV sequence reconstruction, and clinically relevant structural variation, including SARS-CoV-2 variants. Repositories for the projects that participated in the hackathon are available at https://github.com/collaborativebioinformatics. |
| format | Online Article Text |
| id | pubmed-9557141 |
| institution | National Center for Biotechnology Information |
| language | English |
| publishDate | 2022 |
| publisher | F1000 Research Limited |
| record_format | MEDLINE/PubMed |
| spelling | pubmed-95571412022-10-18 The third international hackathon for applying insights into large-scale genomic composition to use cases in a wide range of organisms Walker, Kimberly Kalra, Divya Lowdon, Rebecca Chen, Guangyi Molik, David Soto, Daniela C. Dabbaghie, Fawaz Khleifat, Ahmad Al Mahmoud, Medhat Paulin, Luis F Raza, Muhammad Sohail Pfeifer, Susanne P. Agustinho, Daniel Paiva Aliyev, Elbay Avdeyev, Pavel Barrozo, Enrico R. Behera, Sairam Billingsley, Kimberley Chong, Li Chuin Choubey, Deepak De Coster, Wouter Fu, Yilei Gener, Alejandro R. Hefferon, Timothy Henke, David Morgan Höps, Wolfram Illarionova, Anastasia Jochum, Michael D. Jose, Maria Kesharwani, Rupesh K. Kolora, Sree Rohit Raj Kubica, Jędrzej Lakra, Priya Lattimer, Damaris Liew, Chia-Sin Lo, Bai-Wei Lo, Chunhsuan Lötter, Anneri Majidian, Sina Mendem, Suresh Kumar Mondal, Rajarshi Ohmiya, Hiroko Parvin, Nasrin Peralta, Carolina Poon, Chi-Lam Prabhakaran, Ramanandan Saitou, Marie Sammi, Aditi Sanio, Philippe Sapoval, Nicolae Syed, Najeeb Treangen, Todd Wang, Gaojianyong Xu, Tiancheng Yang, Jianzhi Zhang, Shangzhe Zhou, Weiyu Sedlazeck, Fritz J Busby, Ben F1000Res Software Tool Article In October 2021, 59 scientists from 14 countries and 13 U.S. states collaborated virtually in the Third Annual Baylor College of Medicine & DNANexus Structural Variation hackathon. The goal of the hackathon was to advance research on structural variants (SVs) by prototyping and iterating on open-source software. This led to nine hackathon projects focused on diverse genomics research interests, including various SV discovery and genotyping methods, SV sequence reconstruction, and clinically relevant structural variation, including SARS-CoV-2 variants. Repositories for the projects that participated in the hackathon are available at https://github.com/collaborativebioinformatics. F1000 Research Limited 2022-05-16 /pmc/articles/PMC9557141/ /pubmed/36262335 http://dx.doi.org/10.12688/f1000research.110194.1 Text en Copyright: © 2022 Walker K et al. https://creativecommons.org/licenses/by/4.0/This is an open access article distributed under the terms of the Creative Commons Attribution Licence, which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited. The author(s) is/are employees of the US Government and therefore domestic copyright protection in USA does not apply to this work. The work may be protected under the copyright laws of other jurisdictions when used in those jurisdictions. |
| spellingShingle | Software Tool Article Walker, Kimberly Kalra, Divya Lowdon, Rebecca Chen, Guangyi Molik, David Soto, Daniela C. Dabbaghie, Fawaz Khleifat, Ahmad Al Mahmoud, Medhat Paulin, Luis F Raza, Muhammad Sohail Pfeifer, Susanne P. Agustinho, Daniel Paiva Aliyev, Elbay Avdeyev, Pavel Barrozo, Enrico R. Behera, Sairam Billingsley, Kimberley Chong, Li Chuin Choubey, Deepak De Coster, Wouter Fu, Yilei Gener, Alejandro R. Hefferon, Timothy Henke, David Morgan Höps, Wolfram Illarionova, Anastasia Jochum, Michael D. Jose, Maria Kesharwani, Rupesh K. Kolora, Sree Rohit Raj Kubica, Jędrzej Lakra, Priya Lattimer, Damaris Liew, Chia-Sin Lo, Bai-Wei Lo, Chunhsuan Lötter, Anneri Majidian, Sina Mendem, Suresh Kumar Mondal, Rajarshi Ohmiya, Hiroko Parvin, Nasrin Peralta, Carolina Poon, Chi-Lam Prabhakaran, Ramanandan Saitou, Marie Sammi, Aditi Sanio, Philippe Sapoval, Nicolae Syed, Najeeb Treangen, Todd Wang, Gaojianyong Xu, Tiancheng Yang, Jianzhi Zhang, Shangzhe Zhou, Weiyu Sedlazeck, Fritz J Busby, Ben The third international hackathon for applying insights into large-scale genomic composition to use cases in a wide range of organisms |
| title | The third international hackathon for applying insights into large-scale genomic composition to use cases in a wide range of organisms |
| title_full | The third international hackathon for applying insights into large-scale genomic composition to use cases in a wide range of organisms |
| title_fullStr | The third international hackathon for applying insights into large-scale genomic composition to use cases in a wide range of organisms |
| title_full_unstemmed | The third international hackathon for applying insights into large-scale genomic composition to use cases in a wide range of organisms |
| title_short | The third international hackathon for applying insights into large-scale genomic composition to use cases in a wide range of organisms |
| title_sort | third international hackathon for applying insights into large-scale genomic composition to use cases in a wide range of organisms |
| topic | Software Tool Article |
| url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9557141/ https://www.ncbi.nlm.nih.gov/pubmed/36262335 http://dx.doi.org/10.12688/f1000research.110194.1 |
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