Cargando…
Aliidiomarina halalkaliphila sp. nov., a haloalkaliphilic bacterium isolated from a soda lake in Inner Mongolia Autonomous Region, China
A haloalkaliphilic strain (IM 1326(T)) was isolated from brine sampled at a soda lake in the Inner Mongolia Autonomous Region, China. Cells of the strain were rod-shaped and motile. Strain IM 1326(T) was able to grow at 4–42 °C (optimum, 37 °C) with 0–13.0 % (w/v) NaCl concentrations (optimum at 4.0...
Autores principales: | , , , , , , , , , , , , |
---|---|
Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Microbiology Society
2022
|
Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9558577/ https://www.ncbi.nlm.nih.gov/pubmed/35244531 http://dx.doi.org/10.1099/ijsem.0.005263 |
_version_ | 1784807472759832576 |
---|---|
author | Yang, Ming Xue, Qiong Zuo, Zhenqiang Zhou, Jian Zhang, Shengjie Li, Ming Zhou, Heng Zhang, Manqi Kumar, Sumit Li, Wei Chen, Guiying Zhao, Dahe Xiang, Hua |
author_facet | Yang, Ming Xue, Qiong Zuo, Zhenqiang Zhou, Jian Zhang, Shengjie Li, Ming Zhou, Heng Zhang, Manqi Kumar, Sumit Li, Wei Chen, Guiying Zhao, Dahe Xiang, Hua |
author_sort | Yang, Ming |
collection | PubMed |
description | A haloalkaliphilic strain (IM 1326(T)) was isolated from brine sampled at a soda lake in the Inner Mongolia Autonomous Region, China. Cells of the strain were rod-shaped and motile. Strain IM 1326(T) was able to grow at 4–42 °C (optimum, 37 °C) with 0–13.0 % (w/v) NaCl concentrations (optimum at 4.0–6.0 %) and at pH 7.5–11.0 (optimum at 9.0–10.0). The 16S rRNA gene phylogenetic analysis revealed that the isolate belongs to the genus Aliidiomarina and is closely related to the type strains of Aliidiomarina sanyensis (95.8 % sequence similarity), Aliidiomarina shirensis (95.7 %), Aliidiomarina iranensis (95.4 %) and Aliidiomarina haloalkalitolerans (95.3 %). The whole genome of strain IM 1326(T) was sequenced, and the genomic DNA G+C content was 49.7 mol%. Average nucleotide identity, average amino acid identity and digital DNA–DNA hybridization values between the isolate and the related Aliidiomarina species were 68.1–84.9 %, 76–78 % and 18.4–20.4 %, respectively. The respiratory quinone was ubiquinone-8. The polar lipid profile included diphosphatidylglycerol, phosphatidylglycerol, phosphatidylethanolamine and one unidentified aminophospholipid. The predominant cellular fatty acids were summed feature 9 (10-methyl-C(16 : 0)/iso-C(17 : 1) ω9c, 22.2 %), iso-C(15 : 0) (16.1 %) and iso-C(17 : 0) (13.1 %). Based on the results of phylogenetic analysis, genome relatedness, and the physiological and chemotaxonomic properties of the isolate, strain IM 1326(T) is considered to represent a novel species of the genus Aliidiomarina , for which the name Aliidiomarina halalkaliphila sp. nov. is proposed (type strain IM 1326(T)=CGMCC 1.17056(T)=JCM 34227(T)). |
format | Online Article Text |
id | pubmed-9558577 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2022 |
publisher | Microbiology Society |
record_format | MEDLINE/PubMed |
spelling | pubmed-95585772022-10-14 Aliidiomarina halalkaliphila sp. nov., a haloalkaliphilic bacterium isolated from a soda lake in Inner Mongolia Autonomous Region, China Yang, Ming Xue, Qiong Zuo, Zhenqiang Zhou, Jian Zhang, Shengjie Li, Ming Zhou, Heng Zhang, Manqi Kumar, Sumit Li, Wei Chen, Guiying Zhao, Dahe Xiang, Hua Int J Syst Evol Microbiol New Taxa A haloalkaliphilic strain (IM 1326(T)) was isolated from brine sampled at a soda lake in the Inner Mongolia Autonomous Region, China. Cells of the strain were rod-shaped and motile. Strain IM 1326(T) was able to grow at 4–42 °C (optimum, 37 °C) with 0–13.0 % (w/v) NaCl concentrations (optimum at 4.0–6.0 %) and at pH 7.5–11.0 (optimum at 9.0–10.0). The 16S rRNA gene phylogenetic analysis revealed that the isolate belongs to the genus Aliidiomarina and is closely related to the type strains of Aliidiomarina sanyensis (95.8 % sequence similarity), Aliidiomarina shirensis (95.7 %), Aliidiomarina iranensis (95.4 %) and Aliidiomarina haloalkalitolerans (95.3 %). The whole genome of strain IM 1326(T) was sequenced, and the genomic DNA G+C content was 49.7 mol%. Average nucleotide identity, average amino acid identity and digital DNA–DNA hybridization values between the isolate and the related Aliidiomarina species were 68.1–84.9 %, 76–78 % and 18.4–20.4 %, respectively. The respiratory quinone was ubiquinone-8. The polar lipid profile included diphosphatidylglycerol, phosphatidylglycerol, phosphatidylethanolamine and one unidentified aminophospholipid. The predominant cellular fatty acids were summed feature 9 (10-methyl-C(16 : 0)/iso-C(17 : 1) ω9c, 22.2 %), iso-C(15 : 0) (16.1 %) and iso-C(17 : 0) (13.1 %). Based on the results of phylogenetic analysis, genome relatedness, and the physiological and chemotaxonomic properties of the isolate, strain IM 1326(T) is considered to represent a novel species of the genus Aliidiomarina , for which the name Aliidiomarina halalkaliphila sp. nov. is proposed (type strain IM 1326(T)=CGMCC 1.17056(T)=JCM 34227(T)). Microbiology Society 2022-03-04 /pmc/articles/PMC9558577/ /pubmed/35244531 http://dx.doi.org/10.1099/ijsem.0.005263 Text en © 2022 The Authors https://creativecommons.org/licenses/by/4.0/This is an open-access article distributed under the terms of the Creative Commons Attribution License. This article was made open access via a Publish and Read agreement between the Microbiology Society and the corresponding author’s institution. |
spellingShingle | New Taxa Yang, Ming Xue, Qiong Zuo, Zhenqiang Zhou, Jian Zhang, Shengjie Li, Ming Zhou, Heng Zhang, Manqi Kumar, Sumit Li, Wei Chen, Guiying Zhao, Dahe Xiang, Hua Aliidiomarina halalkaliphila sp. nov., a haloalkaliphilic bacterium isolated from a soda lake in Inner Mongolia Autonomous Region, China |
title |
Aliidiomarina halalkaliphila sp. nov., a haloalkaliphilic bacterium isolated from a soda lake in Inner Mongolia Autonomous Region, China |
title_full |
Aliidiomarina halalkaliphila sp. nov., a haloalkaliphilic bacterium isolated from a soda lake in Inner Mongolia Autonomous Region, China |
title_fullStr |
Aliidiomarina halalkaliphila sp. nov., a haloalkaliphilic bacterium isolated from a soda lake in Inner Mongolia Autonomous Region, China |
title_full_unstemmed |
Aliidiomarina halalkaliphila sp. nov., a haloalkaliphilic bacterium isolated from a soda lake in Inner Mongolia Autonomous Region, China |
title_short |
Aliidiomarina halalkaliphila sp. nov., a haloalkaliphilic bacterium isolated from a soda lake in Inner Mongolia Autonomous Region, China |
title_sort | aliidiomarina halalkaliphila sp. nov., a haloalkaliphilic bacterium isolated from a soda lake in inner mongolia autonomous region, china |
topic | New Taxa |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9558577/ https://www.ncbi.nlm.nih.gov/pubmed/35244531 http://dx.doi.org/10.1099/ijsem.0.005263 |
work_keys_str_mv | AT yangming aliidiomarinahalalkaliphilaspnovahaloalkaliphilicbacteriumisolatedfromasodalakeininnermongoliaautonomousregionchina AT xueqiong aliidiomarinahalalkaliphilaspnovahaloalkaliphilicbacteriumisolatedfromasodalakeininnermongoliaautonomousregionchina AT zuozhenqiang aliidiomarinahalalkaliphilaspnovahaloalkaliphilicbacteriumisolatedfromasodalakeininnermongoliaautonomousregionchina AT zhoujian aliidiomarinahalalkaliphilaspnovahaloalkaliphilicbacteriumisolatedfromasodalakeininnermongoliaautonomousregionchina AT zhangshengjie aliidiomarinahalalkaliphilaspnovahaloalkaliphilicbacteriumisolatedfromasodalakeininnermongoliaautonomousregionchina AT liming aliidiomarinahalalkaliphilaspnovahaloalkaliphilicbacteriumisolatedfromasodalakeininnermongoliaautonomousregionchina AT zhouheng aliidiomarinahalalkaliphilaspnovahaloalkaliphilicbacteriumisolatedfromasodalakeininnermongoliaautonomousregionchina AT zhangmanqi aliidiomarinahalalkaliphilaspnovahaloalkaliphilicbacteriumisolatedfromasodalakeininnermongoliaautonomousregionchina AT kumarsumit aliidiomarinahalalkaliphilaspnovahaloalkaliphilicbacteriumisolatedfromasodalakeininnermongoliaautonomousregionchina AT liwei aliidiomarinahalalkaliphilaspnovahaloalkaliphilicbacteriumisolatedfromasodalakeininnermongoliaautonomousregionchina AT chenguiying aliidiomarinahalalkaliphilaspnovahaloalkaliphilicbacteriumisolatedfromasodalakeininnermongoliaautonomousregionchina AT zhaodahe aliidiomarinahalalkaliphilaspnovahaloalkaliphilicbacteriumisolatedfromasodalakeininnermongoliaautonomousregionchina AT xianghua aliidiomarinahalalkaliphilaspnovahaloalkaliphilicbacteriumisolatedfromasodalakeininnermongoliaautonomousregionchina |