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Aliidiomarina halalkaliphila sp. nov., a haloalkaliphilic bacterium isolated from a soda lake in Inner Mongolia Autonomous Region, China

A haloalkaliphilic strain (IM 1326(T)) was isolated from brine sampled at a soda lake in the Inner Mongolia Autonomous Region, China. Cells of the strain were rod-shaped and motile. Strain IM 1326(T) was able to grow at 4–42 °C (optimum, 37 °C) with 0–13.0 % (w/v) NaCl concentrations (optimum at 4.0...

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Autores principales: Yang, Ming, Xue, Qiong, Zuo, Zhenqiang, Zhou, Jian, Zhang, Shengjie, Li, Ming, Zhou, Heng, Zhang, Manqi, Kumar, Sumit, Li, Wei, Chen, Guiying, Zhao, Dahe, Xiang, Hua
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Microbiology Society 2022
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9558577/
https://www.ncbi.nlm.nih.gov/pubmed/35244531
http://dx.doi.org/10.1099/ijsem.0.005263
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author Yang, Ming
Xue, Qiong
Zuo, Zhenqiang
Zhou, Jian
Zhang, Shengjie
Li, Ming
Zhou, Heng
Zhang, Manqi
Kumar, Sumit
Li, Wei
Chen, Guiying
Zhao, Dahe
Xiang, Hua
author_facet Yang, Ming
Xue, Qiong
Zuo, Zhenqiang
Zhou, Jian
Zhang, Shengjie
Li, Ming
Zhou, Heng
Zhang, Manqi
Kumar, Sumit
Li, Wei
Chen, Guiying
Zhao, Dahe
Xiang, Hua
author_sort Yang, Ming
collection PubMed
description A haloalkaliphilic strain (IM 1326(T)) was isolated from brine sampled at a soda lake in the Inner Mongolia Autonomous Region, China. Cells of the strain were rod-shaped and motile. Strain IM 1326(T) was able to grow at 4–42 °C (optimum, 37 °C) with 0–13.0 % (w/v) NaCl concentrations (optimum at 4.0–6.0 %) and at pH 7.5–11.0 (optimum at 9.0–10.0). The 16S rRNA gene phylogenetic analysis revealed that the isolate belongs to the genus Aliidiomarina and is closely related to the type strains of Aliidiomarina sanyensis (95.8 % sequence similarity), Aliidiomarina shirensis (95.7 %), Aliidiomarina iranensis (95.4 %) and Aliidiomarina haloalkalitolerans (95.3 %). The whole genome of strain IM 1326(T) was sequenced, and the genomic DNA G+C content was 49.7 mol%. Average nucleotide identity, average amino acid identity and digital DNA–DNA hybridization values between the isolate and the related Aliidiomarina species were 68.1–84.9 %, 76–78 % and 18.4–20.4 %, respectively. The respiratory quinone was ubiquinone-8. The polar lipid profile included diphosphatidylglycerol, phosphatidylglycerol, phosphatidylethanolamine and one unidentified aminophospholipid. The predominant cellular fatty acids were summed feature 9 (10-methyl-C(16 : 0)/iso-C(17 : 1) ω9c, 22.2 %), iso-C(15 : 0) (16.1 %) and iso-C(17 : 0) (13.1 %). Based on the results of phylogenetic analysis, genome relatedness, and the physiological and chemotaxonomic properties of the isolate, strain IM 1326(T) is considered to represent a novel species of the genus Aliidiomarina , for which the name Aliidiomarina halalkaliphila sp. nov. is proposed (type strain IM 1326(T)=CGMCC 1.17056(T)=JCM 34227(T)).
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spelling pubmed-95585772022-10-14 Aliidiomarina halalkaliphila sp. nov., a haloalkaliphilic bacterium isolated from a soda lake in Inner Mongolia Autonomous Region, China Yang, Ming Xue, Qiong Zuo, Zhenqiang Zhou, Jian Zhang, Shengjie Li, Ming Zhou, Heng Zhang, Manqi Kumar, Sumit Li, Wei Chen, Guiying Zhao, Dahe Xiang, Hua Int J Syst Evol Microbiol New Taxa A haloalkaliphilic strain (IM 1326(T)) was isolated from brine sampled at a soda lake in the Inner Mongolia Autonomous Region, China. Cells of the strain were rod-shaped and motile. Strain IM 1326(T) was able to grow at 4–42 °C (optimum, 37 °C) with 0–13.0 % (w/v) NaCl concentrations (optimum at 4.0–6.0 %) and at pH 7.5–11.0 (optimum at 9.0–10.0). The 16S rRNA gene phylogenetic analysis revealed that the isolate belongs to the genus Aliidiomarina and is closely related to the type strains of Aliidiomarina sanyensis (95.8 % sequence similarity), Aliidiomarina shirensis (95.7 %), Aliidiomarina iranensis (95.4 %) and Aliidiomarina haloalkalitolerans (95.3 %). The whole genome of strain IM 1326(T) was sequenced, and the genomic DNA G+C content was 49.7 mol%. Average nucleotide identity, average amino acid identity and digital DNA–DNA hybridization values between the isolate and the related Aliidiomarina species were 68.1–84.9 %, 76–78 % and 18.4–20.4 %, respectively. The respiratory quinone was ubiquinone-8. The polar lipid profile included diphosphatidylglycerol, phosphatidylglycerol, phosphatidylethanolamine and one unidentified aminophospholipid. The predominant cellular fatty acids were summed feature 9 (10-methyl-C(16 : 0)/iso-C(17 : 1) ω9c, 22.2 %), iso-C(15 : 0) (16.1 %) and iso-C(17 : 0) (13.1 %). Based on the results of phylogenetic analysis, genome relatedness, and the physiological and chemotaxonomic properties of the isolate, strain IM 1326(T) is considered to represent a novel species of the genus Aliidiomarina , for which the name Aliidiomarina halalkaliphila sp. nov. is proposed (type strain IM 1326(T)=CGMCC 1.17056(T)=JCM 34227(T)). Microbiology Society 2022-03-04 /pmc/articles/PMC9558577/ /pubmed/35244531 http://dx.doi.org/10.1099/ijsem.0.005263 Text en © 2022 The Authors https://creativecommons.org/licenses/by/4.0/This is an open-access article distributed under the terms of the Creative Commons Attribution License. This article was made open access via a Publish and Read agreement between the Microbiology Society and the corresponding author’s institution.
spellingShingle New Taxa
Yang, Ming
Xue, Qiong
Zuo, Zhenqiang
Zhou, Jian
Zhang, Shengjie
Li, Ming
Zhou, Heng
Zhang, Manqi
Kumar, Sumit
Li, Wei
Chen, Guiying
Zhao, Dahe
Xiang, Hua
Aliidiomarina halalkaliphila sp. nov., a haloalkaliphilic bacterium isolated from a soda lake in Inner Mongolia Autonomous Region, China
title Aliidiomarina halalkaliphila sp. nov., a haloalkaliphilic bacterium isolated from a soda lake in Inner Mongolia Autonomous Region, China
title_full Aliidiomarina halalkaliphila sp. nov., a haloalkaliphilic bacterium isolated from a soda lake in Inner Mongolia Autonomous Region, China
title_fullStr Aliidiomarina halalkaliphila sp. nov., a haloalkaliphilic bacterium isolated from a soda lake in Inner Mongolia Autonomous Region, China
title_full_unstemmed Aliidiomarina halalkaliphila sp. nov., a haloalkaliphilic bacterium isolated from a soda lake in Inner Mongolia Autonomous Region, China
title_short Aliidiomarina halalkaliphila sp. nov., a haloalkaliphilic bacterium isolated from a soda lake in Inner Mongolia Autonomous Region, China
title_sort aliidiomarina halalkaliphila sp. nov., a haloalkaliphilic bacterium isolated from a soda lake in inner mongolia autonomous region, china
topic New Taxa
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9558577/
https://www.ncbi.nlm.nih.gov/pubmed/35244531
http://dx.doi.org/10.1099/ijsem.0.005263
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