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Complete chloroplast genome of Ligularia biceps Kitam, 1941 (Asteraceae)

Ligularia biceps is a plant belonging to Ligularia Cass., most of which have certain medicinal value. In this study, the chloroplast (cp) genome of L. biceps was sequenced for the first time. The L. biceps cp genome sequence length was 151,153 bp, with an large single-copy (LSC) region length of 83,...

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Autores principales: Song, Yue-Yue, Shi, Chang-Neng, Bian, Che, Xu, Liang, Yang, Yan-Yun, Xie, Ming, Kang, Ting-Guo
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Taylor & Francis 2022
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9559319/
https://www.ncbi.nlm.nih.gov/pubmed/36245813
http://dx.doi.org/10.1080/23802359.2022.2130716
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author Song, Yue-Yue
Shi, Chang-Neng
Bian, Che
Xu, Liang
Yang, Yan-Yun
Xie, Ming
Kang, Ting-Guo
author_facet Song, Yue-Yue
Shi, Chang-Neng
Bian, Che
Xu, Liang
Yang, Yan-Yun
Xie, Ming
Kang, Ting-Guo
author_sort Song, Yue-Yue
collection PubMed
description Ligularia biceps is a plant belonging to Ligularia Cass., most of which have certain medicinal value. In this study, the chloroplast (cp) genome of L. biceps was sequenced for the first time. The L. biceps cp genome sequence length was 151,153 bp, with an large single-copy (LSC) region length of 83,259 bp, an small single-copy (SSC) region length of 18,234 bp, a pair of inverted repeat regions (IRs) length of 24,830 bp and GC content of 37.5%. In total, 131 genes were annotated, including 86 protein-coding genes, eight rRNA genes, and 37 tRNA genes. The phylogenetic tree was built based on 23 species, using the maximum-likelihood method. The results showed that the species clustered with other Ligularia Cass. species. This study provides a theoretical basis for establishing a classification system.
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spelling pubmed-95593192022-10-14 Complete chloroplast genome of Ligularia biceps Kitam, 1941 (Asteraceae) Song, Yue-Yue Shi, Chang-Neng Bian, Che Xu, Liang Yang, Yan-Yun Xie, Ming Kang, Ting-Guo Mitochondrial DNA B Resour Plastome Announcement Ligularia biceps is a plant belonging to Ligularia Cass., most of which have certain medicinal value. In this study, the chloroplast (cp) genome of L. biceps was sequenced for the first time. The L. biceps cp genome sequence length was 151,153 bp, with an large single-copy (LSC) region length of 83,259 bp, an small single-copy (SSC) region length of 18,234 bp, a pair of inverted repeat regions (IRs) length of 24,830 bp and GC content of 37.5%. In total, 131 genes were annotated, including 86 protein-coding genes, eight rRNA genes, and 37 tRNA genes. The phylogenetic tree was built based on 23 species, using the maximum-likelihood method. The results showed that the species clustered with other Ligularia Cass. species. This study provides a theoretical basis for establishing a classification system. Taylor & Francis 2022-10-12 /pmc/articles/PMC9559319/ /pubmed/36245813 http://dx.doi.org/10.1080/23802359.2022.2130716 Text en © 2022 The Author(s). Published by Informa UK Limited, trading as Taylor & Francis Group. https://creativecommons.org/licenses/by/4.0/This is an Open Access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/4.0/ (https://creativecommons.org/licenses/by/4.0/) ), which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited.
spellingShingle Plastome Announcement
Song, Yue-Yue
Shi, Chang-Neng
Bian, Che
Xu, Liang
Yang, Yan-Yun
Xie, Ming
Kang, Ting-Guo
Complete chloroplast genome of Ligularia biceps Kitam, 1941 (Asteraceae)
title Complete chloroplast genome of Ligularia biceps Kitam, 1941 (Asteraceae)
title_full Complete chloroplast genome of Ligularia biceps Kitam, 1941 (Asteraceae)
title_fullStr Complete chloroplast genome of Ligularia biceps Kitam, 1941 (Asteraceae)
title_full_unstemmed Complete chloroplast genome of Ligularia biceps Kitam, 1941 (Asteraceae)
title_short Complete chloroplast genome of Ligularia biceps Kitam, 1941 (Asteraceae)
title_sort complete chloroplast genome of ligularia biceps kitam, 1941 (asteraceae)
topic Plastome Announcement
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9559319/
https://www.ncbi.nlm.nih.gov/pubmed/36245813
http://dx.doi.org/10.1080/23802359.2022.2130716
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