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Deep learning-based feature extraction for prediction and interpretation of sharp-wave ripples in the rodent hippocampus
Local field potential (LFP) deflections and oscillations define hippocampal sharp-wave ripples (SWRs), one of the most synchronous events of the brain. SWRs reflect firing and synaptic current sequences emerging from cognitively relevant neuronal ensembles. While spectral analysis have permitted adv...
Autores principales: | , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
eLife Sciences Publications, Ltd
2022
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9560163/ https://www.ncbi.nlm.nih.gov/pubmed/36062906 http://dx.doi.org/10.7554/eLife.77772 |
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author | Navas-Olive, Andrea Amaducci, Rodrigo Jurado-Parras, Maria-Teresa Sebastian, Enrique R de la Prida, Liset M |
author_facet | Navas-Olive, Andrea Amaducci, Rodrigo Jurado-Parras, Maria-Teresa Sebastian, Enrique R de la Prida, Liset M |
author_sort | Navas-Olive, Andrea |
collection | PubMed |
description | Local field potential (LFP) deflections and oscillations define hippocampal sharp-wave ripples (SWRs), one of the most synchronous events of the brain. SWRs reflect firing and synaptic current sequences emerging from cognitively relevant neuronal ensembles. While spectral analysis have permitted advances, the surge of ultra-dense recordings now call for new automatic detection strategies. Here, we show how one-dimensional convolutional networks operating over high-density LFP hippocampal recordings allowed for automatic identification of SWR from the rodent hippocampus. When applied without retraining to new datasets and ultra-dense hippocampus-wide recordings, we discovered physiologically relevant processes associated to the emergence of SWR, prompting for novel classification criteria. To gain interpretability, we developed a method to interrogate the operation of the artificial network. We found it relied in feature-based specialization, which permit identification of spatially segregated oscillations and deflections, as well as synchronous population firing typical of replay. Thus, using deep learning-based approaches may change the current heuristic for a better mechanistic interpretation of these relevant neurophysiological events. |
format | Online Article Text |
id | pubmed-9560163 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2022 |
publisher | eLife Sciences Publications, Ltd |
record_format | MEDLINE/PubMed |
spelling | pubmed-95601632022-10-14 Deep learning-based feature extraction for prediction and interpretation of sharp-wave ripples in the rodent hippocampus Navas-Olive, Andrea Amaducci, Rodrigo Jurado-Parras, Maria-Teresa Sebastian, Enrique R de la Prida, Liset M eLife Neuroscience Local field potential (LFP) deflections and oscillations define hippocampal sharp-wave ripples (SWRs), one of the most synchronous events of the brain. SWRs reflect firing and synaptic current sequences emerging from cognitively relevant neuronal ensembles. While spectral analysis have permitted advances, the surge of ultra-dense recordings now call for new automatic detection strategies. Here, we show how one-dimensional convolutional networks operating over high-density LFP hippocampal recordings allowed for automatic identification of SWR from the rodent hippocampus. When applied without retraining to new datasets and ultra-dense hippocampus-wide recordings, we discovered physiologically relevant processes associated to the emergence of SWR, prompting for novel classification criteria. To gain interpretability, we developed a method to interrogate the operation of the artificial network. We found it relied in feature-based specialization, which permit identification of spatially segregated oscillations and deflections, as well as synchronous population firing typical of replay. Thus, using deep learning-based approaches may change the current heuristic for a better mechanistic interpretation of these relevant neurophysiological events. eLife Sciences Publications, Ltd 2022-09-05 /pmc/articles/PMC9560163/ /pubmed/36062906 http://dx.doi.org/10.7554/eLife.77772 Text en © 2022, Navas-Olive, Amaducci et al https://creativecommons.org/licenses/by/4.0/This article is distributed under the terms of the Creative Commons Attribution License (https://creativecommons.org/licenses/by/4.0/) , which permits unrestricted use and redistribution provided that the original author and source are credited. |
spellingShingle | Neuroscience Navas-Olive, Andrea Amaducci, Rodrigo Jurado-Parras, Maria-Teresa Sebastian, Enrique R de la Prida, Liset M Deep learning-based feature extraction for prediction and interpretation of sharp-wave ripples in the rodent hippocampus |
title | Deep learning-based feature extraction for prediction and interpretation of sharp-wave ripples in the rodent hippocampus |
title_full | Deep learning-based feature extraction for prediction and interpretation of sharp-wave ripples in the rodent hippocampus |
title_fullStr | Deep learning-based feature extraction for prediction and interpretation of sharp-wave ripples in the rodent hippocampus |
title_full_unstemmed | Deep learning-based feature extraction for prediction and interpretation of sharp-wave ripples in the rodent hippocampus |
title_short | Deep learning-based feature extraction for prediction and interpretation of sharp-wave ripples in the rodent hippocampus |
title_sort | deep learning-based feature extraction for prediction and interpretation of sharp-wave ripples in the rodent hippocampus |
topic | Neuroscience |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9560163/ https://www.ncbi.nlm.nih.gov/pubmed/36062906 http://dx.doi.org/10.7554/eLife.77772 |
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