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Deep learning-based feature extraction for prediction and interpretation of sharp-wave ripples in the rodent hippocampus

Local field potential (LFP) deflections and oscillations define hippocampal sharp-wave ripples (SWRs), one of the most synchronous events of the brain. SWRs reflect firing and synaptic current sequences emerging from cognitively relevant neuronal ensembles. While spectral analysis have permitted adv...

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Autores principales: Navas-Olive, Andrea, Amaducci, Rodrigo, Jurado-Parras, Maria-Teresa, Sebastian, Enrique R, de la Prida, Liset M
Formato: Online Artículo Texto
Lenguaje:English
Publicado: eLife Sciences Publications, Ltd 2022
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9560163/
https://www.ncbi.nlm.nih.gov/pubmed/36062906
http://dx.doi.org/10.7554/eLife.77772
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author Navas-Olive, Andrea
Amaducci, Rodrigo
Jurado-Parras, Maria-Teresa
Sebastian, Enrique R
de la Prida, Liset M
author_facet Navas-Olive, Andrea
Amaducci, Rodrigo
Jurado-Parras, Maria-Teresa
Sebastian, Enrique R
de la Prida, Liset M
author_sort Navas-Olive, Andrea
collection PubMed
description Local field potential (LFP) deflections and oscillations define hippocampal sharp-wave ripples (SWRs), one of the most synchronous events of the brain. SWRs reflect firing and synaptic current sequences emerging from cognitively relevant neuronal ensembles. While spectral analysis have permitted advances, the surge of ultra-dense recordings now call for new automatic detection strategies. Here, we show how one-dimensional convolutional networks operating over high-density LFP hippocampal recordings allowed for automatic identification of SWR from the rodent hippocampus. When applied without retraining to new datasets and ultra-dense hippocampus-wide recordings, we discovered physiologically relevant processes associated to the emergence of SWR, prompting for novel classification criteria. To gain interpretability, we developed a method to interrogate the operation of the artificial network. We found it relied in feature-based specialization, which permit identification of spatially segregated oscillations and deflections, as well as synchronous population firing typical of replay. Thus, using deep learning-based approaches may change the current heuristic for a better mechanistic interpretation of these relevant neurophysiological events.
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spelling pubmed-95601632022-10-14 Deep learning-based feature extraction for prediction and interpretation of sharp-wave ripples in the rodent hippocampus Navas-Olive, Andrea Amaducci, Rodrigo Jurado-Parras, Maria-Teresa Sebastian, Enrique R de la Prida, Liset M eLife Neuroscience Local field potential (LFP) deflections and oscillations define hippocampal sharp-wave ripples (SWRs), one of the most synchronous events of the brain. SWRs reflect firing and synaptic current sequences emerging from cognitively relevant neuronal ensembles. While spectral analysis have permitted advances, the surge of ultra-dense recordings now call for new automatic detection strategies. Here, we show how one-dimensional convolutional networks operating over high-density LFP hippocampal recordings allowed for automatic identification of SWR from the rodent hippocampus. When applied without retraining to new datasets and ultra-dense hippocampus-wide recordings, we discovered physiologically relevant processes associated to the emergence of SWR, prompting for novel classification criteria. To gain interpretability, we developed a method to interrogate the operation of the artificial network. We found it relied in feature-based specialization, which permit identification of spatially segregated oscillations and deflections, as well as synchronous population firing typical of replay. Thus, using deep learning-based approaches may change the current heuristic for a better mechanistic interpretation of these relevant neurophysiological events. eLife Sciences Publications, Ltd 2022-09-05 /pmc/articles/PMC9560163/ /pubmed/36062906 http://dx.doi.org/10.7554/eLife.77772 Text en © 2022, Navas-Olive, Amaducci et al https://creativecommons.org/licenses/by/4.0/This article is distributed under the terms of the Creative Commons Attribution License (https://creativecommons.org/licenses/by/4.0/) , which permits unrestricted use and redistribution provided that the original author and source are credited.
spellingShingle Neuroscience
Navas-Olive, Andrea
Amaducci, Rodrigo
Jurado-Parras, Maria-Teresa
Sebastian, Enrique R
de la Prida, Liset M
Deep learning-based feature extraction for prediction and interpretation of sharp-wave ripples in the rodent hippocampus
title Deep learning-based feature extraction for prediction and interpretation of sharp-wave ripples in the rodent hippocampus
title_full Deep learning-based feature extraction for prediction and interpretation of sharp-wave ripples in the rodent hippocampus
title_fullStr Deep learning-based feature extraction for prediction and interpretation of sharp-wave ripples in the rodent hippocampus
title_full_unstemmed Deep learning-based feature extraction for prediction and interpretation of sharp-wave ripples in the rodent hippocampus
title_short Deep learning-based feature extraction for prediction and interpretation of sharp-wave ripples in the rodent hippocampus
title_sort deep learning-based feature extraction for prediction and interpretation of sharp-wave ripples in the rodent hippocampus
topic Neuroscience
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9560163/
https://www.ncbi.nlm.nih.gov/pubmed/36062906
http://dx.doi.org/10.7554/eLife.77772
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