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Genetic and immune crosstalk between severe burns and blunt trauma: A study of transcriptomic data
Background: Severe burns and blunt trauma can lead to multiple organ dysfunction syndrome, the leading cause of death in intensive care units. In addition to infection, the degree of immune inflammatory response also affects prognosis. However, the characteristics and clinical relevance of the commo...
Autores principales: | , , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Frontiers Media S.A.
2022
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9561827/ https://www.ncbi.nlm.nih.gov/pubmed/36246590 http://dx.doi.org/10.3389/fgene.2022.1038222 |
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author | Chen, Xiaoming Wang, Kuan Li, Dazhuang Zhao, Mingyue Huang, Biao Su, Wenxing Yu, Daojiang |
author_facet | Chen, Xiaoming Wang, Kuan Li, Dazhuang Zhao, Mingyue Huang, Biao Su, Wenxing Yu, Daojiang |
author_sort | Chen, Xiaoming |
collection | PubMed |
description | Background: Severe burns and blunt trauma can lead to multiple organ dysfunction syndrome, the leading cause of death in intensive care units. In addition to infection, the degree of immune inflammatory response also affects prognosis. However, the characteristics and clinical relevance of the common mechanisms of these major diseases are still underexplored. Methods: In the present study, we performed microarray data analysis to identify immune-related differentially expressed genes (DEGs) involved in both disease progression in burns and blunt trauma. Six analyses were subsequently performed, including gene enrichment analysis, protein‐protein interaction (PPI) network construction, immune cell infiltration analysis, core gene identification, co-expression network analysis, and clinical correlation analysis. Results: A total of 117 common immune-related DEGs was selected for subsequent analyses. Functional analysis emphasizes the important role of Th17 cell differentiation, Th1 and Th2 cell differentiation, Cytokine-cytokine receptor interaction and T cell receptor signaling pathway in these two diseases. Finally, eight core DEGs were identified using cytoHubba, including CD8A, IL10, CCL5, CD28, LCK, CCL4, IL2RB, and STAT1. The correlation analysis showed that the identified core DEGs were more or less significantly associated with simultaneous dysregulation of immune cells in blunt trauma and sepsis patients. Of these, the downregulation of CD8A and CD28 had a worse prognosis. Conclusion: Our analysis lays the groundwork for future studies to elucidate molecular mechanisms shared in burns and blunt trauma. The functional roles of identified core immune-related DEGs and dysregulated immune cell subsets warrant further in-depth study. |
format | Online Article Text |
id | pubmed-9561827 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2022 |
publisher | Frontiers Media S.A. |
record_format | MEDLINE/PubMed |
spelling | pubmed-95618272022-10-15 Genetic and immune crosstalk between severe burns and blunt trauma: A study of transcriptomic data Chen, Xiaoming Wang, Kuan Li, Dazhuang Zhao, Mingyue Huang, Biao Su, Wenxing Yu, Daojiang Front Genet Genetics Background: Severe burns and blunt trauma can lead to multiple organ dysfunction syndrome, the leading cause of death in intensive care units. In addition to infection, the degree of immune inflammatory response also affects prognosis. However, the characteristics and clinical relevance of the common mechanisms of these major diseases are still underexplored. Methods: In the present study, we performed microarray data analysis to identify immune-related differentially expressed genes (DEGs) involved in both disease progression in burns and blunt trauma. Six analyses were subsequently performed, including gene enrichment analysis, protein‐protein interaction (PPI) network construction, immune cell infiltration analysis, core gene identification, co-expression network analysis, and clinical correlation analysis. Results: A total of 117 common immune-related DEGs was selected for subsequent analyses. Functional analysis emphasizes the important role of Th17 cell differentiation, Th1 and Th2 cell differentiation, Cytokine-cytokine receptor interaction and T cell receptor signaling pathway in these two diseases. Finally, eight core DEGs were identified using cytoHubba, including CD8A, IL10, CCL5, CD28, LCK, CCL4, IL2RB, and STAT1. The correlation analysis showed that the identified core DEGs were more or less significantly associated with simultaneous dysregulation of immune cells in blunt trauma and sepsis patients. Of these, the downregulation of CD8A and CD28 had a worse prognosis. Conclusion: Our analysis lays the groundwork for future studies to elucidate molecular mechanisms shared in burns and blunt trauma. The functional roles of identified core immune-related DEGs and dysregulated immune cell subsets warrant further in-depth study. Frontiers Media S.A. 2022-09-30 /pmc/articles/PMC9561827/ /pubmed/36246590 http://dx.doi.org/10.3389/fgene.2022.1038222 Text en Copyright © 2022 Chen, Wang, Li, Zhao, Huang, Su and Yu. https://creativecommons.org/licenses/by/4.0/This is an open-access article distributed under the terms of the Creative Commons Attribution License (CC BY). The use, distribution or reproduction in other forums is permitted, provided the original author(s) and the copyright owner(s) are credited and that the original publication in this journal is cited, in accordance with accepted academic practice. No use, distribution or reproduction is permitted which does not comply with these terms. |
spellingShingle | Genetics Chen, Xiaoming Wang, Kuan Li, Dazhuang Zhao, Mingyue Huang, Biao Su, Wenxing Yu, Daojiang Genetic and immune crosstalk between severe burns and blunt trauma: A study of transcriptomic data |
title | Genetic and immune crosstalk between severe burns and blunt trauma: A study of transcriptomic data |
title_full | Genetic and immune crosstalk between severe burns and blunt trauma: A study of transcriptomic data |
title_fullStr | Genetic and immune crosstalk between severe burns and blunt trauma: A study of transcriptomic data |
title_full_unstemmed | Genetic and immune crosstalk between severe burns and blunt trauma: A study of transcriptomic data |
title_short | Genetic and immune crosstalk between severe burns and blunt trauma: A study of transcriptomic data |
title_sort | genetic and immune crosstalk between severe burns and blunt trauma: a study of transcriptomic data |
topic | Genetics |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9561827/ https://www.ncbi.nlm.nih.gov/pubmed/36246590 http://dx.doi.org/10.3389/fgene.2022.1038222 |
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