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Establishment and evaluation of module-based immune-associated gene signature to predict overall survival in patients of colon adenocarcinoma

BACKGROUND: Patients with colon adenocarcinoma (COAD) exhibit significant heterogeneity in overall survival. The current tumor-node-metastasis staging system is insufficient to provide a precise prediction for prognosis. Identification and evaluation of new risk models by using big cancer data may p...

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Autores principales: Lu, Jing, Annunziata, Francesco, Sirvinskas, Dovydas, Omrani, Omid, Li, Huahui, Rasa, Seyed Mohammad Mahdi, Krepelova, Anna, Adam, Lisa, Neri, Francesco
Formato: Online Artículo Texto
Lenguaje:English
Publicado: BioMed Central 2022
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9563160/
https://www.ncbi.nlm.nih.gov/pubmed/36229806
http://dx.doi.org/10.1186/s12929-022-00867-2
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author Lu, Jing
Annunziata, Francesco
Sirvinskas, Dovydas
Omrani, Omid
Li, Huahui
Rasa, Seyed Mohammad Mahdi
Krepelova, Anna
Adam, Lisa
Neri, Francesco
author_facet Lu, Jing
Annunziata, Francesco
Sirvinskas, Dovydas
Omrani, Omid
Li, Huahui
Rasa, Seyed Mohammad Mahdi
Krepelova, Anna
Adam, Lisa
Neri, Francesco
author_sort Lu, Jing
collection PubMed
description BACKGROUND: Patients with colon adenocarcinoma (COAD) exhibit significant heterogeneity in overall survival. The current tumor-node-metastasis staging system is insufficient to provide a precise prediction for prognosis. Identification and evaluation of new risk models by using big cancer data may provide a good way to identify prognosis-related signature. METHODS: We integrated different datasets and applied bioinformatic and statistical methods to construct a robust immune-associated risk model for COAD prognosis. Furthermore, a nomogram was constructed based on the gene signature and clinicopathological features to improve risk stratification and quantify risk assessment for individual patients. RESULTS: The immune-associated risk model discriminated high-risk patients in our investigated and validated cohorts. Survival analyses demonstrated that our gene signature served as an independent risk factor for overall survival and the nomogram exhibited high accuracy. Functional analysis interpreted the correlation between our risk model and its role in prognosis by classifying groups with different immune activities. Remarkably, patients in the low-risk group showed higher immune activity, while those in the high-risk group displayed a lower immune activity. CONCLUSIONS: Our study provides a novel tool that may contribute to the optimization of risk stratification for survival and personalized management of COAD. GRAPHICAL ABSTRACT: [Image: see text] SUPPLEMENTARY INFORMATION: The online version contains supplementary material available at 10.1186/s12929-022-00867-2.
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spelling pubmed-95631602022-10-15 Establishment and evaluation of module-based immune-associated gene signature to predict overall survival in patients of colon adenocarcinoma Lu, Jing Annunziata, Francesco Sirvinskas, Dovydas Omrani, Omid Li, Huahui Rasa, Seyed Mohammad Mahdi Krepelova, Anna Adam, Lisa Neri, Francesco J Biomed Sci Research BACKGROUND: Patients with colon adenocarcinoma (COAD) exhibit significant heterogeneity in overall survival. The current tumor-node-metastasis staging system is insufficient to provide a precise prediction for prognosis. Identification and evaluation of new risk models by using big cancer data may provide a good way to identify prognosis-related signature. METHODS: We integrated different datasets and applied bioinformatic and statistical methods to construct a robust immune-associated risk model for COAD prognosis. Furthermore, a nomogram was constructed based on the gene signature and clinicopathological features to improve risk stratification and quantify risk assessment for individual patients. RESULTS: The immune-associated risk model discriminated high-risk patients in our investigated and validated cohorts. Survival analyses demonstrated that our gene signature served as an independent risk factor for overall survival and the nomogram exhibited high accuracy. Functional analysis interpreted the correlation between our risk model and its role in prognosis by classifying groups with different immune activities. Remarkably, patients in the low-risk group showed higher immune activity, while those in the high-risk group displayed a lower immune activity. CONCLUSIONS: Our study provides a novel tool that may contribute to the optimization of risk stratification for survival and personalized management of COAD. GRAPHICAL ABSTRACT: [Image: see text] SUPPLEMENTARY INFORMATION: The online version contains supplementary material available at 10.1186/s12929-022-00867-2. BioMed Central 2022-10-14 /pmc/articles/PMC9563160/ /pubmed/36229806 http://dx.doi.org/10.1186/s12929-022-00867-2 Text en © The Author(s) 2022 https://creativecommons.org/licenses/by/4.0/Open AccessThis article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons licence, and indicate if changes were made. The images or other third party material in this article are included in the article's Creative Commons licence, unless indicated otherwise in a credit line to the material. If material is not included in the article's Creative Commons licence and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this licence, visit http://creativecommons.org/licenses/by/4.0/ (https://creativecommons.org/licenses/by/4.0/) . The Creative Commons Public Domain Dedication waiver (http://creativecommons.org/publicdomain/zero/1.0/ (https://creativecommons.org/publicdomain/zero/1.0/) ) applies to the data made available in this article, unless otherwise stated in a credit line to the data.
spellingShingle Research
Lu, Jing
Annunziata, Francesco
Sirvinskas, Dovydas
Omrani, Omid
Li, Huahui
Rasa, Seyed Mohammad Mahdi
Krepelova, Anna
Adam, Lisa
Neri, Francesco
Establishment and evaluation of module-based immune-associated gene signature to predict overall survival in patients of colon adenocarcinoma
title Establishment and evaluation of module-based immune-associated gene signature to predict overall survival in patients of colon adenocarcinoma
title_full Establishment and evaluation of module-based immune-associated gene signature to predict overall survival in patients of colon adenocarcinoma
title_fullStr Establishment and evaluation of module-based immune-associated gene signature to predict overall survival in patients of colon adenocarcinoma
title_full_unstemmed Establishment and evaluation of module-based immune-associated gene signature to predict overall survival in patients of colon adenocarcinoma
title_short Establishment and evaluation of module-based immune-associated gene signature to predict overall survival in patients of colon adenocarcinoma
title_sort establishment and evaluation of module-based immune-associated gene signature to predict overall survival in patients of colon adenocarcinoma
topic Research
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9563160/
https://www.ncbi.nlm.nih.gov/pubmed/36229806
http://dx.doi.org/10.1186/s12929-022-00867-2
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