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GameRank: R package for feature selection and construction

MOTIVATION: Building calibrated and discriminating predictive models can be developed through the direct optimization of model performance metrics with combinatorial search algorithms. Often, predictive algorithms are desired in clinical settings to identify patients that may be high and low risk. H...

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Detalles Bibliográficos
Autores principales: Henneges, Carsten, Paulson, Joseph N
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Oxford University Press 2022
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9563696/
https://www.ncbi.nlm.nih.gov/pubmed/35951761
http://dx.doi.org/10.1093/bioinformatics/btac552
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author Henneges, Carsten
Paulson, Joseph N
author_facet Henneges, Carsten
Paulson, Joseph N
author_sort Henneges, Carsten
collection PubMed
description MOTIVATION: Building calibrated and discriminating predictive models can be developed through the direct optimization of model performance metrics with combinatorial search algorithms. Often, predictive algorithms are desired in clinical settings to identify patients that may be high and low risk. However, due to the large combinatorial search space, these algorithms are slow and do not guarantee the global optimality of their selection. RESULTS: Here, we present a novel and quick maximum likelihood-based feature selection algorithm, named GameRank. The method is implemented into an R package composed of additional functions to build calibrated and discriminative predictive models. AVAILABILITY AND IMPLEMENTATION: GameRank is available at https://github.com/Genentech/GameRank and released under the MIT License.
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spelling pubmed-95636962022-10-18 GameRank: R package for feature selection and construction Henneges, Carsten Paulson, Joseph N Bioinformatics Applications Notes MOTIVATION: Building calibrated and discriminating predictive models can be developed through the direct optimization of model performance metrics with combinatorial search algorithms. Often, predictive algorithms are desired in clinical settings to identify patients that may be high and low risk. However, due to the large combinatorial search space, these algorithms are slow and do not guarantee the global optimality of their selection. RESULTS: Here, we present a novel and quick maximum likelihood-based feature selection algorithm, named GameRank. The method is implemented into an R package composed of additional functions to build calibrated and discriminative predictive models. AVAILABILITY AND IMPLEMENTATION: GameRank is available at https://github.com/Genentech/GameRank and released under the MIT License. Oxford University Press 2022-08-11 /pmc/articles/PMC9563696/ /pubmed/35951761 http://dx.doi.org/10.1093/bioinformatics/btac552 Text en © The Author(s) 2022. Published by Oxford University Press. https://creativecommons.org/licenses/by/4.0/This is an Open Access article distributed under the terms of the Creative Commons Attribution License (https://creativecommons.org/licenses/by/4.0/), which permits unrestricted reuse, distribution, and reproduction in any medium, provided the original work is properly cited.
spellingShingle Applications Notes
Henneges, Carsten
Paulson, Joseph N
GameRank: R package for feature selection and construction
title GameRank: R package for feature selection and construction
title_full GameRank: R package for feature selection and construction
title_fullStr GameRank: R package for feature selection and construction
title_full_unstemmed GameRank: R package for feature selection and construction
title_short GameRank: R package for feature selection and construction
title_sort gamerank: r package for feature selection and construction
topic Applications Notes
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9563696/
https://www.ncbi.nlm.nih.gov/pubmed/35951761
http://dx.doi.org/10.1093/bioinformatics/btac552
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