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GameRank: R package for feature selection and construction
MOTIVATION: Building calibrated and discriminating predictive models can be developed through the direct optimization of model performance metrics with combinatorial search algorithms. Often, predictive algorithms are desired in clinical settings to identify patients that may be high and low risk. H...
Autores principales: | , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Oxford University Press
2022
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9563696/ https://www.ncbi.nlm.nih.gov/pubmed/35951761 http://dx.doi.org/10.1093/bioinformatics/btac552 |
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author | Henneges, Carsten Paulson, Joseph N |
author_facet | Henneges, Carsten Paulson, Joseph N |
author_sort | Henneges, Carsten |
collection | PubMed |
description | MOTIVATION: Building calibrated and discriminating predictive models can be developed through the direct optimization of model performance metrics with combinatorial search algorithms. Often, predictive algorithms are desired in clinical settings to identify patients that may be high and low risk. However, due to the large combinatorial search space, these algorithms are slow and do not guarantee the global optimality of their selection. RESULTS: Here, we present a novel and quick maximum likelihood-based feature selection algorithm, named GameRank. The method is implemented into an R package composed of additional functions to build calibrated and discriminative predictive models. AVAILABILITY AND IMPLEMENTATION: GameRank is available at https://github.com/Genentech/GameRank and released under the MIT License. |
format | Online Article Text |
id | pubmed-9563696 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2022 |
publisher | Oxford University Press |
record_format | MEDLINE/PubMed |
spelling | pubmed-95636962022-10-18 GameRank: R package for feature selection and construction Henneges, Carsten Paulson, Joseph N Bioinformatics Applications Notes MOTIVATION: Building calibrated and discriminating predictive models can be developed through the direct optimization of model performance metrics with combinatorial search algorithms. Often, predictive algorithms are desired in clinical settings to identify patients that may be high and low risk. However, due to the large combinatorial search space, these algorithms are slow and do not guarantee the global optimality of their selection. RESULTS: Here, we present a novel and quick maximum likelihood-based feature selection algorithm, named GameRank. The method is implemented into an R package composed of additional functions to build calibrated and discriminative predictive models. AVAILABILITY AND IMPLEMENTATION: GameRank is available at https://github.com/Genentech/GameRank and released under the MIT License. Oxford University Press 2022-08-11 /pmc/articles/PMC9563696/ /pubmed/35951761 http://dx.doi.org/10.1093/bioinformatics/btac552 Text en © The Author(s) 2022. Published by Oxford University Press. https://creativecommons.org/licenses/by/4.0/This is an Open Access article distributed under the terms of the Creative Commons Attribution License (https://creativecommons.org/licenses/by/4.0/), which permits unrestricted reuse, distribution, and reproduction in any medium, provided the original work is properly cited. |
spellingShingle | Applications Notes Henneges, Carsten Paulson, Joseph N GameRank: R package for feature selection and construction |
title | GameRank: R package for feature selection and construction |
title_full | GameRank: R package for feature selection and construction |
title_fullStr | GameRank: R package for feature selection and construction |
title_full_unstemmed | GameRank: R package for feature selection and construction |
title_short | GameRank: R package for feature selection and construction |
title_sort | gamerank: r package for feature selection and construction |
topic | Applications Notes |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9563696/ https://www.ncbi.nlm.nih.gov/pubmed/35951761 http://dx.doi.org/10.1093/bioinformatics/btac552 |
work_keys_str_mv | AT hennegescarsten gamerankrpackageforfeatureselectionandconstruction AT paulsonjosephn gamerankrpackageforfeatureselectionandconstruction |