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Exploring the casual association between coffee intake and bladder cancer risk using Mendelian Randomization
Objective: Several observational studies have suggested that coffee consumption is associated with a lower risk of bladder cancer. However, observational studies are susceptible to confounding factors and reverse causality. We used a two-sample Mendelian randomization (MR) method to assess the causa...
Autores principales: | , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Frontiers Media S.A.
2022
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9565034/ https://www.ncbi.nlm.nih.gov/pubmed/36246584 http://dx.doi.org/10.3389/fgene.2022.992599 |
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author | Deng, Yuqing Wu, Tingting Luo, Gang Chen, Lin |
author_facet | Deng, Yuqing Wu, Tingting Luo, Gang Chen, Lin |
author_sort | Deng, Yuqing |
collection | PubMed |
description | Objective: Several observational studies have suggested that coffee consumption is associated with a lower risk of bladder cancer. However, observational studies are susceptible to confounding factors and reverse causality. We used a two-sample Mendelian randomization (MR) method to assess the causal nature of this association. Methods: At the genome-wide significance level (p < 5 × 10(−8)), 12 single nucleotide polymorphisms (SNPs) strongly associated with coffee consumption were used as instrumental variables (IVs). Summary-level data on genetic variation in bladder cancer were obtained from the United Kingdom biobank (420,838 samples) and FinnGen consortium (175,121 samples). Multiple MR methods were used. Heterogeneity and horizontal pleiotropy were detected using Cochran’s Q test and MR-Egger. Results: Twelve SNPs were included in the primary analysis. After excluding 8 SNPs with potential secondary phenotypes, the remaining 4 SNPs were included in the sensitivity analysis. In all analyses, Cochran’s Q statistic indicated that there was no heterogeneity among SNPs, and the MR-Egger analysis did not reveal the existence of horizontal pleiotropy (p > 0.05). In the United Kingdom Biobank, the odds ratio (OR) for bladder cancer was 1.022 (95% confidence interval (CI), 0.679–1.537) for per 50% increase in coffee consumption. Consistent results were obtained in the FinnGen consortium (OR = 0.890, 95% CI, 0.467–1.697). Sensitivity analysis showed consistent results with primary analysis. Conclusion This study does not support a causal association between habitual coffee consumption and bladder cancer risk. |
format | Online Article Text |
id | pubmed-9565034 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2022 |
publisher | Frontiers Media S.A. |
record_format | MEDLINE/PubMed |
spelling | pubmed-95650342022-10-15 Exploring the casual association between coffee intake and bladder cancer risk using Mendelian Randomization Deng, Yuqing Wu, Tingting Luo, Gang Chen, Lin Front Genet Genetics Objective: Several observational studies have suggested that coffee consumption is associated with a lower risk of bladder cancer. However, observational studies are susceptible to confounding factors and reverse causality. We used a two-sample Mendelian randomization (MR) method to assess the causal nature of this association. Methods: At the genome-wide significance level (p < 5 × 10(−8)), 12 single nucleotide polymorphisms (SNPs) strongly associated with coffee consumption were used as instrumental variables (IVs). Summary-level data on genetic variation in bladder cancer were obtained from the United Kingdom biobank (420,838 samples) and FinnGen consortium (175,121 samples). Multiple MR methods were used. Heterogeneity and horizontal pleiotropy were detected using Cochran’s Q test and MR-Egger. Results: Twelve SNPs were included in the primary analysis. After excluding 8 SNPs with potential secondary phenotypes, the remaining 4 SNPs were included in the sensitivity analysis. In all analyses, Cochran’s Q statistic indicated that there was no heterogeneity among SNPs, and the MR-Egger analysis did not reveal the existence of horizontal pleiotropy (p > 0.05). In the United Kingdom Biobank, the odds ratio (OR) for bladder cancer was 1.022 (95% confidence interval (CI), 0.679–1.537) for per 50% increase in coffee consumption. Consistent results were obtained in the FinnGen consortium (OR = 0.890, 95% CI, 0.467–1.697). Sensitivity analysis showed consistent results with primary analysis. Conclusion This study does not support a causal association between habitual coffee consumption and bladder cancer risk. Frontiers Media S.A. 2022-09-30 /pmc/articles/PMC9565034/ /pubmed/36246584 http://dx.doi.org/10.3389/fgene.2022.992599 Text en Copyright © 2022 Deng, Wu, Luo and Chen. https://creativecommons.org/licenses/by/4.0/This is an open-access article distributed under the terms of the Creative Commons Attribution License (CC BY). The use, distribution or reproduction in other forums is permitted, provided the original author(s) and the copyright owner(s) are credited and that the original publication in this journal is cited, in accordance with accepted academic practice. No use, distribution or reproduction is permitted which does not comply with these terms. |
spellingShingle | Genetics Deng, Yuqing Wu, Tingting Luo, Gang Chen, Lin Exploring the casual association between coffee intake and bladder cancer risk using Mendelian Randomization |
title | Exploring the casual association between coffee intake and bladder cancer risk using Mendelian Randomization |
title_full | Exploring the casual association between coffee intake and bladder cancer risk using Mendelian Randomization |
title_fullStr | Exploring the casual association between coffee intake and bladder cancer risk using Mendelian Randomization |
title_full_unstemmed | Exploring the casual association between coffee intake and bladder cancer risk using Mendelian Randomization |
title_short | Exploring the casual association between coffee intake and bladder cancer risk using Mendelian Randomization |
title_sort | exploring the casual association between coffee intake and bladder cancer risk using mendelian randomization |
topic | Genetics |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9565034/ https://www.ncbi.nlm.nih.gov/pubmed/36246584 http://dx.doi.org/10.3389/fgene.2022.992599 |
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