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Computer-aided diagnostic for classifying chest X-ray images using deep ensemble learning

BACKGROUND: Nowadays doctors and radiologists are overwhelmed with a huge amount of work. This led to the effort to design different Computer-Aided Diagnosis systems (CAD system), with the aim of accomplishing a faster and more accurate diagnosis. The current development of deep learning is a big op...

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Autores principales: Visuña, Lara, Yang, Dandi, Garcia-Blas, Javier, Carretero, Jesus
Formato: Online Artículo Texto
Lenguaje:English
Publicado: BioMed Central 2022
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9568999/
https://www.ncbi.nlm.nih.gov/pubmed/36243705
http://dx.doi.org/10.1186/s12880-022-00904-4
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author Visuña, Lara
Yang, Dandi
Garcia-Blas, Javier
Carretero, Jesus
author_facet Visuña, Lara
Yang, Dandi
Garcia-Blas, Javier
Carretero, Jesus
author_sort Visuña, Lara
collection PubMed
description BACKGROUND: Nowadays doctors and radiologists are overwhelmed with a huge amount of work. This led to the effort to design different Computer-Aided Diagnosis systems (CAD system), with the aim of accomplishing a faster and more accurate diagnosis. The current development of deep learning is a big opportunity for the development of new CADs. In this paper, we propose a novel architecture for a convolutional neural network (CNN) ensemble for classifying chest X-ray (CRX) images into four classes: viral Pneumonia, Tuberculosis, COVID-19, and Healthy. Although Computed tomography (CT) is the best way to detect and diagnoses pulmonary issues, CT is more expensive than CRX. Furthermore, CRX is commonly the first step in the diagnosis, so it’s very important to be accurate in the early stages of diagnosis and treatment. RESULTS: We applied the transfer learning technique and data augmentation to all CNNs for obtaining better performance. We have designed and evaluated two different CNN-ensembles: Stacking and Voting. This system is ready to be applied in a CAD system to automated diagnosis such a second or previous opinion before the doctors or radiology’s. Our results show a great improvement, 99% accuracy of the Stacking Ensemble and 98% of accuracy for the the Voting Ensemble. CONCLUSIONS: To minimize missclassifications, we included six different base CNN models in our architecture (VGG16, VGG19, InceptionV3, ResNet101V2, DenseNet121 and CheXnet) and it could be extended to any number as well as we expect extend the number of diseases to detected. The proposed method has been validated using a large dataset created by mixing several public datasets with different image sizes and quality. As we demonstrate in the evaluation carried out, we reach better results and generalization compared with previous works. In addition, we make a first approach to explainable deep learning with the objective of providing professionals more information that may be valuable when evaluating CRXs.
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spelling pubmed-95689992022-10-16 Computer-aided diagnostic for classifying chest X-ray images using deep ensemble learning Visuña, Lara Yang, Dandi Garcia-Blas, Javier Carretero, Jesus BMC Med Imaging Research BACKGROUND: Nowadays doctors and radiologists are overwhelmed with a huge amount of work. This led to the effort to design different Computer-Aided Diagnosis systems (CAD system), with the aim of accomplishing a faster and more accurate diagnosis. The current development of deep learning is a big opportunity for the development of new CADs. In this paper, we propose a novel architecture for a convolutional neural network (CNN) ensemble for classifying chest X-ray (CRX) images into four classes: viral Pneumonia, Tuberculosis, COVID-19, and Healthy. Although Computed tomography (CT) is the best way to detect and diagnoses pulmonary issues, CT is more expensive than CRX. Furthermore, CRX is commonly the first step in the diagnosis, so it’s very important to be accurate in the early stages of diagnosis and treatment. RESULTS: We applied the transfer learning technique and data augmentation to all CNNs for obtaining better performance. We have designed and evaluated two different CNN-ensembles: Stacking and Voting. This system is ready to be applied in a CAD system to automated diagnosis such a second or previous opinion before the doctors or radiology’s. Our results show a great improvement, 99% accuracy of the Stacking Ensemble and 98% of accuracy for the the Voting Ensemble. CONCLUSIONS: To minimize missclassifications, we included six different base CNN models in our architecture (VGG16, VGG19, InceptionV3, ResNet101V2, DenseNet121 and CheXnet) and it could be extended to any number as well as we expect extend the number of diseases to detected. The proposed method has been validated using a large dataset created by mixing several public datasets with different image sizes and quality. As we demonstrate in the evaluation carried out, we reach better results and generalization compared with previous works. In addition, we make a first approach to explainable deep learning with the objective of providing professionals more information that may be valuable when evaluating CRXs. BioMed Central 2022-10-15 /pmc/articles/PMC9568999/ /pubmed/36243705 http://dx.doi.org/10.1186/s12880-022-00904-4 Text en © The Author(s) 2022 https://creativecommons.org/licenses/by/4.0/Open AccessThis article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons licence, and indicate if changes were made. The images or other third party material in this article are included in the article's Creative Commons licence, unless indicated otherwise in a credit line to the material. If material is not included in the article's Creative Commons licence and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this licence, visit http://creativecommons.org/licenses/by/4.0/ (https://creativecommons.org/licenses/by/4.0/) . The Creative Commons Public Domain Dedication waiver (http://creativecommons.org/publicdomain/zero/1.0/ (https://creativecommons.org/publicdomain/zero/1.0/) ) applies to the data made available in this article, unless otherwise stated in a credit line to the data.
spellingShingle Research
Visuña, Lara
Yang, Dandi
Garcia-Blas, Javier
Carretero, Jesus
Computer-aided diagnostic for classifying chest X-ray images using deep ensemble learning
title Computer-aided diagnostic for classifying chest X-ray images using deep ensemble learning
title_full Computer-aided diagnostic for classifying chest X-ray images using deep ensemble learning
title_fullStr Computer-aided diagnostic for classifying chest X-ray images using deep ensemble learning
title_full_unstemmed Computer-aided diagnostic for classifying chest X-ray images using deep ensemble learning
title_short Computer-aided diagnostic for classifying chest X-ray images using deep ensemble learning
title_sort computer-aided diagnostic for classifying chest x-ray images using deep ensemble learning
topic Research
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9568999/
https://www.ncbi.nlm.nih.gov/pubmed/36243705
http://dx.doi.org/10.1186/s12880-022-00904-4
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