Cargando…
Genome-Wide Identification and Expression Analysis of MAPK Gene Family in Lettuce (Lactuca sativa L.) and Functional Analysis of LsMAPK4 in High- Temperature-Induced Bolting
The mitogen-activated protein kinase (MAPK) pathway is a widely distributed signaling cascade in eukaryotes and is involved in regulating plant growth, development, and stress responses. High temperature, a frequently occurring environmental stressor, causes premature bolting in lettuce with quality...
Autores principales: | , , , , , , , |
---|---|
Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
MDPI
2022
|
Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9569992/ https://www.ncbi.nlm.nih.gov/pubmed/36232436 http://dx.doi.org/10.3390/ijms231911129 |
_version_ | 1784809995503665152 |
---|---|
author | Wang, Tingzhen Liu, Mingjia Wu, Yang Tian, Yufeng Han, Yingyan Liu, Chaojie Hao, Jinhong Fan, Shuangxi |
author_facet | Wang, Tingzhen Liu, Mingjia Wu, Yang Tian, Yufeng Han, Yingyan Liu, Chaojie Hao, Jinhong Fan, Shuangxi |
author_sort | Wang, Tingzhen |
collection | PubMed |
description | The mitogen-activated protein kinase (MAPK) pathway is a widely distributed signaling cascade in eukaryotes and is involved in regulating plant growth, development, and stress responses. High temperature, a frequently occurring environmental stressor, causes premature bolting in lettuce with quality decline and yield loss. However, whether MAPKs play roles in thermally induced bolting remains poorly understood. In this study, 17 LsMAPK family members were identified from the lettuce genome. The physical and chemical properties, subcellular localization, chromosome localization, phylogeny, gene structure, family evolution, cis-acting elements, and phosphorylation sites of the LsMAPK gene family were evaluated via in silico analysis. According to phylogenetic relationships, LsMAPKs can be divided into four groups, A, B, C, and D, which is supported by analyses of gene structure and conserved domains. The collinearity analysis showed that there were 5 collinearity pairs among LsMAPKs, 8 with AtMAPKs, and 13 with SlMAPKs. The predicted cis-acting elements and potential phosphorylation sites were closely associated with hormones, stress resistance, growth, and development. Expression analysis showed that most LsMAPKs respond to high temperatures, among which LsMAPK4 is significantly and continuously upregulated upon heat treatments. Under heat stress, the stem length of the LsMAPK4-knockdown lines was significantly shorter than that of the control plants, and the microscope observations demonstrated that the differentiation time of flower buds at the stem apex was delayed accordingly. Therefore, silencing of LsMAPK4 significantly inhibited the high- temperature-accelerated bolting in lettuce, indicating that LsMPAK4 might be a potential regulator of lettuce bolting. This study provides a theoretical basis for a better understanding of the molecular mechanisms underlying the MAPK genes in high-temperature-induced bolting. |
format | Online Article Text |
id | pubmed-9569992 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2022 |
publisher | MDPI |
record_format | MEDLINE/PubMed |
spelling | pubmed-95699922022-10-17 Genome-Wide Identification and Expression Analysis of MAPK Gene Family in Lettuce (Lactuca sativa L.) and Functional Analysis of LsMAPK4 in High- Temperature-Induced Bolting Wang, Tingzhen Liu, Mingjia Wu, Yang Tian, Yufeng Han, Yingyan Liu, Chaojie Hao, Jinhong Fan, Shuangxi Int J Mol Sci Article The mitogen-activated protein kinase (MAPK) pathway is a widely distributed signaling cascade in eukaryotes and is involved in regulating plant growth, development, and stress responses. High temperature, a frequently occurring environmental stressor, causes premature bolting in lettuce with quality decline and yield loss. However, whether MAPKs play roles in thermally induced bolting remains poorly understood. In this study, 17 LsMAPK family members were identified from the lettuce genome. The physical and chemical properties, subcellular localization, chromosome localization, phylogeny, gene structure, family evolution, cis-acting elements, and phosphorylation sites of the LsMAPK gene family were evaluated via in silico analysis. According to phylogenetic relationships, LsMAPKs can be divided into four groups, A, B, C, and D, which is supported by analyses of gene structure and conserved domains. The collinearity analysis showed that there were 5 collinearity pairs among LsMAPKs, 8 with AtMAPKs, and 13 with SlMAPKs. The predicted cis-acting elements and potential phosphorylation sites were closely associated with hormones, stress resistance, growth, and development. Expression analysis showed that most LsMAPKs respond to high temperatures, among which LsMAPK4 is significantly and continuously upregulated upon heat treatments. Under heat stress, the stem length of the LsMAPK4-knockdown lines was significantly shorter than that of the control plants, and the microscope observations demonstrated that the differentiation time of flower buds at the stem apex was delayed accordingly. Therefore, silencing of LsMAPK4 significantly inhibited the high- temperature-accelerated bolting in lettuce, indicating that LsMPAK4 might be a potential regulator of lettuce bolting. This study provides a theoretical basis for a better understanding of the molecular mechanisms underlying the MAPK genes in high-temperature-induced bolting. MDPI 2022-09-22 /pmc/articles/PMC9569992/ /pubmed/36232436 http://dx.doi.org/10.3390/ijms231911129 Text en © 2022 by the authors. https://creativecommons.org/licenses/by/4.0/Licensee MDPI, Basel, Switzerland. This article is an open access article distributed under the terms and conditions of the Creative Commons Attribution (CC BY) license (https://creativecommons.org/licenses/by/4.0/). |
spellingShingle | Article Wang, Tingzhen Liu, Mingjia Wu, Yang Tian, Yufeng Han, Yingyan Liu, Chaojie Hao, Jinhong Fan, Shuangxi Genome-Wide Identification and Expression Analysis of MAPK Gene Family in Lettuce (Lactuca sativa L.) and Functional Analysis of LsMAPK4 in High- Temperature-Induced Bolting |
title | Genome-Wide Identification and Expression Analysis of MAPK Gene Family in Lettuce (Lactuca sativa L.) and Functional Analysis of LsMAPK4 in High- Temperature-Induced Bolting |
title_full | Genome-Wide Identification and Expression Analysis of MAPK Gene Family in Lettuce (Lactuca sativa L.) and Functional Analysis of LsMAPK4 in High- Temperature-Induced Bolting |
title_fullStr | Genome-Wide Identification and Expression Analysis of MAPK Gene Family in Lettuce (Lactuca sativa L.) and Functional Analysis of LsMAPK4 in High- Temperature-Induced Bolting |
title_full_unstemmed | Genome-Wide Identification and Expression Analysis of MAPK Gene Family in Lettuce (Lactuca sativa L.) and Functional Analysis of LsMAPK4 in High- Temperature-Induced Bolting |
title_short | Genome-Wide Identification and Expression Analysis of MAPK Gene Family in Lettuce (Lactuca sativa L.) and Functional Analysis of LsMAPK4 in High- Temperature-Induced Bolting |
title_sort | genome-wide identification and expression analysis of mapk gene family in lettuce (lactuca sativa l.) and functional analysis of lsmapk4 in high- temperature-induced bolting |
topic | Article |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9569992/ https://www.ncbi.nlm.nih.gov/pubmed/36232436 http://dx.doi.org/10.3390/ijms231911129 |
work_keys_str_mv | AT wangtingzhen genomewideidentificationandexpressionanalysisofmapkgenefamilyinlettucelactucasativalandfunctionalanalysisoflsmapk4inhightemperatureinducedbolting AT liumingjia genomewideidentificationandexpressionanalysisofmapkgenefamilyinlettucelactucasativalandfunctionalanalysisoflsmapk4inhightemperatureinducedbolting AT wuyang genomewideidentificationandexpressionanalysisofmapkgenefamilyinlettucelactucasativalandfunctionalanalysisoflsmapk4inhightemperatureinducedbolting AT tianyufeng genomewideidentificationandexpressionanalysisofmapkgenefamilyinlettucelactucasativalandfunctionalanalysisoflsmapk4inhightemperatureinducedbolting AT hanyingyan genomewideidentificationandexpressionanalysisofmapkgenefamilyinlettucelactucasativalandfunctionalanalysisoflsmapk4inhightemperatureinducedbolting AT liuchaojie genomewideidentificationandexpressionanalysisofmapkgenefamilyinlettucelactucasativalandfunctionalanalysisoflsmapk4inhightemperatureinducedbolting AT haojinhong genomewideidentificationandexpressionanalysisofmapkgenefamilyinlettucelactucasativalandfunctionalanalysisoflsmapk4inhightemperatureinducedbolting AT fanshuangxi genomewideidentificationandexpressionanalysisofmapkgenefamilyinlettucelactucasativalandfunctionalanalysisoflsmapk4inhightemperatureinducedbolting |