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Image Segmentation and Quantification of Droplet dPCR Based on Thermal Bubble Printing Technology

Thermal inkjet printing can generate more than 300,000 droplets of picoliter scale within one second stably, and the image analysis workflow is used to quantify the positive and negative values of the droplets. In this paper, the SimpleBlobDetector detection algorithm is used to identify and localiz...

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Autores principales: Zhu, Mingjie, Shan, Zilong, Ning, Wei, Wu, Xuanye
Formato: Online Artículo Texto
Lenguaje:English
Publicado: MDPI 2022
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9573249/
https://www.ncbi.nlm.nih.gov/pubmed/36236321
http://dx.doi.org/10.3390/s22197222
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author Zhu, Mingjie
Shan, Zilong
Ning, Wei
Wu, Xuanye
author_facet Zhu, Mingjie
Shan, Zilong
Ning, Wei
Wu, Xuanye
author_sort Zhu, Mingjie
collection PubMed
description Thermal inkjet printing can generate more than 300,000 droplets of picoliter scale within one second stably, and the image analysis workflow is used to quantify the positive and negative values of the droplets. In this paper, the SimpleBlobDetector detection algorithm is used to identify and localize droplets with a volume of 24 pL in bright field images and suppress bright spots and scratches when performing droplet location identification. The polynomial surface fitting of the pixel grayscale value of the fluorescence channel image can effectively compensate and correct the image vignetting caused by the optical path, and the compensated fluorescence image can accurately classify positive and negative droplets by the k-means clustering algorithm. 20 µL of the sample solution in the result reading chip can produce more than 100,000 effective droplets. The effective droplet identification correct rate of 20 images of random statistical samples can reach more than 99% and the classification accuracy of positive and negative droplets can reach more than 98% on average. This paper overcomes the problem of effectively classifying positive and negative droplets caused by the poor image quality of photographed picolitre ddPCR droplets caused by optical hardware limitations.
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spelling pubmed-95732492022-10-17 Image Segmentation and Quantification of Droplet dPCR Based on Thermal Bubble Printing Technology Zhu, Mingjie Shan, Zilong Ning, Wei Wu, Xuanye Sensors (Basel) Article Thermal inkjet printing can generate more than 300,000 droplets of picoliter scale within one second stably, and the image analysis workflow is used to quantify the positive and negative values of the droplets. In this paper, the SimpleBlobDetector detection algorithm is used to identify and localize droplets with a volume of 24 pL in bright field images and suppress bright spots and scratches when performing droplet location identification. The polynomial surface fitting of the pixel grayscale value of the fluorescence channel image can effectively compensate and correct the image vignetting caused by the optical path, and the compensated fluorescence image can accurately classify positive and negative droplets by the k-means clustering algorithm. 20 µL of the sample solution in the result reading chip can produce more than 100,000 effective droplets. The effective droplet identification correct rate of 20 images of random statistical samples can reach more than 99% and the classification accuracy of positive and negative droplets can reach more than 98% on average. This paper overcomes the problem of effectively classifying positive and negative droplets caused by the poor image quality of photographed picolitre ddPCR droplets caused by optical hardware limitations. MDPI 2022-09-23 /pmc/articles/PMC9573249/ /pubmed/36236321 http://dx.doi.org/10.3390/s22197222 Text en © 2022 by the authors. https://creativecommons.org/licenses/by/4.0/Licensee MDPI, Basel, Switzerland. This article is an open access article distributed under the terms and conditions of the Creative Commons Attribution (CC BY) license (https://creativecommons.org/licenses/by/4.0/).
spellingShingle Article
Zhu, Mingjie
Shan, Zilong
Ning, Wei
Wu, Xuanye
Image Segmentation and Quantification of Droplet dPCR Based on Thermal Bubble Printing Technology
title Image Segmentation and Quantification of Droplet dPCR Based on Thermal Bubble Printing Technology
title_full Image Segmentation and Quantification of Droplet dPCR Based on Thermal Bubble Printing Technology
title_fullStr Image Segmentation and Quantification of Droplet dPCR Based on Thermal Bubble Printing Technology
title_full_unstemmed Image Segmentation and Quantification of Droplet dPCR Based on Thermal Bubble Printing Technology
title_short Image Segmentation and Quantification of Droplet dPCR Based on Thermal Bubble Printing Technology
title_sort image segmentation and quantification of droplet dpcr based on thermal bubble printing technology
topic Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9573249/
https://www.ncbi.nlm.nih.gov/pubmed/36236321
http://dx.doi.org/10.3390/s22197222
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