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Development and validation of a predictive model combining clinical, radiomics, and deep transfer learning features for lymph node metastasis in early gastric cancer
BACKGROUND: This study aims to develop and validate a predictive model combining deep transfer learning, radiomics, and clinical features for lymph node metastasis (LNM) in early gastric cancer (EGC). MATERIALS AND METHODS: This study retrospectively collected 555 patients with EGC, and randomly div...
Autores principales: | , , , , , , , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Frontiers Media S.A.
2022
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9573999/ https://www.ncbi.nlm.nih.gov/pubmed/36262277 http://dx.doi.org/10.3389/fmed.2022.986437 |
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author | Zeng, Qingwen Li, Hong Zhu, Yanyan Feng, Zongfeng Shu, Xufeng Wu, Ahao Luo, Lianghua Cao, Yi Tu, Yi Xiong, Jianbo Zhou, Fuqing Li, Zhengrong |
author_facet | Zeng, Qingwen Li, Hong Zhu, Yanyan Feng, Zongfeng Shu, Xufeng Wu, Ahao Luo, Lianghua Cao, Yi Tu, Yi Xiong, Jianbo Zhou, Fuqing Li, Zhengrong |
author_sort | Zeng, Qingwen |
collection | PubMed |
description | BACKGROUND: This study aims to develop and validate a predictive model combining deep transfer learning, radiomics, and clinical features for lymph node metastasis (LNM) in early gastric cancer (EGC). MATERIALS AND METHODS: This study retrospectively collected 555 patients with EGC, and randomly divided them into two cohorts with a ratio of 7:3 (training cohort, n = 388; internal validation cohort, n = 167). A total of 79 patients with EGC collected from the Second Affiliated Hospital of Soochow University were used as external validation cohort. Pre-trained deep learning networks were used to extract deep transfer learning (DTL) features, and radiomics features were extracted based on hand-crafted features. We employed the Spearman rank correlation test and least absolute shrinkage and selection operator regression for feature selection from the combined features of clinical, radiomics, and DTL features, and then, machine learning classification models including support vector machine, K-nearest neighbor, random decision forests (RF), and XGBoost were trained, and their performance by determining the area under the curve (AUC) were compared. RESULTS: We constructed eight pre-trained transfer learning networks and extracted DTL features, respectively. The results showed that 1,048 DTL features extracted based on the pre-trained Resnet152 network combined in the predictive model had the best performance in discriminating the LNM status of EGC, with an AUC of 0.901 (95% CI: 0.847–0.956) and 0.915 (95% CI: 0.850–0.981) in the internal validation and external validation cohorts, respectively. CONCLUSION: We first utilized comprehensive multidimensional data based on deep transfer learning, radiomics, and clinical features with a good predictive ability for discriminating the LNM status in EGC, which could provide favorable information when choosing therapy options for individuals with EGC. |
format | Online Article Text |
id | pubmed-9573999 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2022 |
publisher | Frontiers Media S.A. |
record_format | MEDLINE/PubMed |
spelling | pubmed-95739992022-10-18 Development and validation of a predictive model combining clinical, radiomics, and deep transfer learning features for lymph node metastasis in early gastric cancer Zeng, Qingwen Li, Hong Zhu, Yanyan Feng, Zongfeng Shu, Xufeng Wu, Ahao Luo, Lianghua Cao, Yi Tu, Yi Xiong, Jianbo Zhou, Fuqing Li, Zhengrong Front Med (Lausanne) Medicine BACKGROUND: This study aims to develop and validate a predictive model combining deep transfer learning, radiomics, and clinical features for lymph node metastasis (LNM) in early gastric cancer (EGC). MATERIALS AND METHODS: This study retrospectively collected 555 patients with EGC, and randomly divided them into two cohorts with a ratio of 7:3 (training cohort, n = 388; internal validation cohort, n = 167). A total of 79 patients with EGC collected from the Second Affiliated Hospital of Soochow University were used as external validation cohort. Pre-trained deep learning networks were used to extract deep transfer learning (DTL) features, and radiomics features were extracted based on hand-crafted features. We employed the Spearman rank correlation test and least absolute shrinkage and selection operator regression for feature selection from the combined features of clinical, radiomics, and DTL features, and then, machine learning classification models including support vector machine, K-nearest neighbor, random decision forests (RF), and XGBoost were trained, and their performance by determining the area under the curve (AUC) were compared. RESULTS: We constructed eight pre-trained transfer learning networks and extracted DTL features, respectively. The results showed that 1,048 DTL features extracted based on the pre-trained Resnet152 network combined in the predictive model had the best performance in discriminating the LNM status of EGC, with an AUC of 0.901 (95% CI: 0.847–0.956) and 0.915 (95% CI: 0.850–0.981) in the internal validation and external validation cohorts, respectively. CONCLUSION: We first utilized comprehensive multidimensional data based on deep transfer learning, radiomics, and clinical features with a good predictive ability for discriminating the LNM status in EGC, which could provide favorable information when choosing therapy options for individuals with EGC. Frontiers Media S.A. 2022-10-03 /pmc/articles/PMC9573999/ /pubmed/36262277 http://dx.doi.org/10.3389/fmed.2022.986437 Text en Copyright © 2022 Zeng, Li, Zhu, Feng, Shu, Wu, Luo, Cao, Tu, Xiong, Zhou and Li. https://creativecommons.org/licenses/by/4.0/This is an open-access article distributed under the terms of the Creative Commons Attribution License (CC BY). The use, distribution or reproduction in other forums is permitted, provided the original author(s) and the copyright owner(s) are credited and that the original publication in this journal is cited, in accordance with accepted academic practice. No use, distribution or reproduction is permitted which does not comply with these terms. |
spellingShingle | Medicine Zeng, Qingwen Li, Hong Zhu, Yanyan Feng, Zongfeng Shu, Xufeng Wu, Ahao Luo, Lianghua Cao, Yi Tu, Yi Xiong, Jianbo Zhou, Fuqing Li, Zhengrong Development and validation of a predictive model combining clinical, radiomics, and deep transfer learning features for lymph node metastasis in early gastric cancer |
title | Development and validation of a predictive model combining clinical, radiomics, and deep transfer learning features for lymph node metastasis in early gastric cancer |
title_full | Development and validation of a predictive model combining clinical, radiomics, and deep transfer learning features for lymph node metastasis in early gastric cancer |
title_fullStr | Development and validation of a predictive model combining clinical, radiomics, and deep transfer learning features for lymph node metastasis in early gastric cancer |
title_full_unstemmed | Development and validation of a predictive model combining clinical, radiomics, and deep transfer learning features for lymph node metastasis in early gastric cancer |
title_short | Development and validation of a predictive model combining clinical, radiomics, and deep transfer learning features for lymph node metastasis in early gastric cancer |
title_sort | development and validation of a predictive model combining clinical, radiomics, and deep transfer learning features for lymph node metastasis in early gastric cancer |
topic | Medicine |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9573999/ https://www.ncbi.nlm.nih.gov/pubmed/36262277 http://dx.doi.org/10.3389/fmed.2022.986437 |
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