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Immune cell infiltration-related clinical diagnostic model for Ankylosing Spondylitis

Background: The pathogenesis and diagnosis of Ankylosing Spondylitis (AS) has remained uncertain due to several reasons, including the lack of studies on the local and systemic immune response in AS. To construct a clinical diagnostic model, this study identified the micro RNA-messenger RNA (miRNA-m...

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Autores principales: Zhou, Chenxing, Liang, Tuo, Jiang, Jie, Zhang, Zide, Chen, Jiarui, Chen, Tianyou, Chen, Liyi, Sun, Xuhua, Huang, ShengSheng, Zhu, Jichong, Wu, Shaofeng, Zhan, Xinli, Liu, Chong
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Frontiers Media S.A. 2022
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9575679/
https://www.ncbi.nlm.nih.gov/pubmed/36263434
http://dx.doi.org/10.3389/fgene.2022.949882
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author Zhou, Chenxing
Liang, Tuo
Jiang, Jie
Zhang, Zide
Chen, Jiarui
Chen, Tianyou
Chen, Liyi
Sun, Xuhua
Huang, ShengSheng
Zhu, Jichong
Wu, Shaofeng
Zhan, Xinli
Liu, Chong
author_facet Zhou, Chenxing
Liang, Tuo
Jiang, Jie
Zhang, Zide
Chen, Jiarui
Chen, Tianyou
Chen, Liyi
Sun, Xuhua
Huang, ShengSheng
Zhu, Jichong
Wu, Shaofeng
Zhan, Xinli
Liu, Chong
author_sort Zhou, Chenxing
collection PubMed
description Background: The pathogenesis and diagnosis of Ankylosing Spondylitis (AS) has remained uncertain due to several reasons, including the lack of studies on the local and systemic immune response in AS. To construct a clinical diagnostic model, this study identified the micro RNA-messenger RNA (miRNA-mRNA) interaction network and immune cell infiltration-related hub genes associated with AS. Materials and Methods: Total RNA was extracted and purified from the interspinous ligament tissue samples of three patients with AS and three patients without AS; miRNA and mRNA microarrays were constructed using the extracted RNA. Bioinformatic tools were used to construct an miRNA-mRNA network, identify hub genes, and analyze immune infiltration associated with AS. Next, we collected the blood samples and clinical characteristics of 359 patients (197 with AS and 162 without AS). On the basis of the clinical characteristics and results of the routine blood tests, we selected immune-related cells whose numbers were significantly different in patients with AS and patients without AS. Univariate and multivariate logistic regression analysis was performed to construct a nomogram. Immunohistochemistry staining analysis was utilized to verify the differentially expression of LYN in AS and controls. Results: A total of 225 differentially expressed miRNAs (DE miRNAs) and 406 differentially expressed mRNAs (DE mRNAs) were identified from the microarray. We selected 15 DE miRNAs and 38 DE mRNAs to construct a miRNA-mRNA network. The expression of LYN, an immune-related gene, correlated with the counts of monocytes, neutrophils, and dendritic cells. Based on the independent predictive factors of sex, age, and counts of monocytes, neutrophils, and white blood cells, a nomogram was established. Receiver operating characteristic (ROC) analysis was performed to evaluate the nomogram, with a C-index of 0.835 and AUC of 0.855. Conclusion: LYN, an immune-related hub gene, correlated with immune cell infiltration in patients with AS. In addition, the counts of monocytes and neutrophils were the independent diagnostic factors for AS. If verified in future studies, a diagnostic model based on these findings may be used to predict AS effectively.
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spelling pubmed-95756792022-10-18 Immune cell infiltration-related clinical diagnostic model for Ankylosing Spondylitis Zhou, Chenxing Liang, Tuo Jiang, Jie Zhang, Zide Chen, Jiarui Chen, Tianyou Chen, Liyi Sun, Xuhua Huang, ShengSheng Zhu, Jichong Wu, Shaofeng Zhan, Xinli Liu, Chong Front Genet Genetics Background: The pathogenesis and diagnosis of Ankylosing Spondylitis (AS) has remained uncertain due to several reasons, including the lack of studies on the local and systemic immune response in AS. To construct a clinical diagnostic model, this study identified the micro RNA-messenger RNA (miRNA-mRNA) interaction network and immune cell infiltration-related hub genes associated with AS. Materials and Methods: Total RNA was extracted and purified from the interspinous ligament tissue samples of three patients with AS and three patients without AS; miRNA and mRNA microarrays were constructed using the extracted RNA. Bioinformatic tools were used to construct an miRNA-mRNA network, identify hub genes, and analyze immune infiltration associated with AS. Next, we collected the blood samples and clinical characteristics of 359 patients (197 with AS and 162 without AS). On the basis of the clinical characteristics and results of the routine blood tests, we selected immune-related cells whose numbers were significantly different in patients with AS and patients without AS. Univariate and multivariate logistic regression analysis was performed to construct a nomogram. Immunohistochemistry staining analysis was utilized to verify the differentially expression of LYN in AS and controls. Results: A total of 225 differentially expressed miRNAs (DE miRNAs) and 406 differentially expressed mRNAs (DE mRNAs) were identified from the microarray. We selected 15 DE miRNAs and 38 DE mRNAs to construct a miRNA-mRNA network. The expression of LYN, an immune-related gene, correlated with the counts of monocytes, neutrophils, and dendritic cells. Based on the independent predictive factors of sex, age, and counts of monocytes, neutrophils, and white blood cells, a nomogram was established. Receiver operating characteristic (ROC) analysis was performed to evaluate the nomogram, with a C-index of 0.835 and AUC of 0.855. Conclusion: LYN, an immune-related hub gene, correlated with immune cell infiltration in patients with AS. In addition, the counts of monocytes and neutrophils were the independent diagnostic factors for AS. If verified in future studies, a diagnostic model based on these findings may be used to predict AS effectively. Frontiers Media S.A. 2022-09-05 /pmc/articles/PMC9575679/ /pubmed/36263434 http://dx.doi.org/10.3389/fgene.2022.949882 Text en Copyright © 2022 Zhou, Liang, Jiang, Zhang, Chen, Chen, Chen, Sun, Huang, Zhu, Wu, Zhan and Liu. https://creativecommons.org/licenses/by/4.0/This is an open-access article distributed under the terms of the Creative Commons Attribution License (CC BY). The use, distribution or reproduction in other forums is permitted, provided the original author(s) and the copyright owner(s) are credited and that the original publication in this journal is cited, in accordance with accepted academic practice. No use, distribution or reproduction is permitted which does not comply with these terms.
spellingShingle Genetics
Zhou, Chenxing
Liang, Tuo
Jiang, Jie
Zhang, Zide
Chen, Jiarui
Chen, Tianyou
Chen, Liyi
Sun, Xuhua
Huang, ShengSheng
Zhu, Jichong
Wu, Shaofeng
Zhan, Xinli
Liu, Chong
Immune cell infiltration-related clinical diagnostic model for Ankylosing Spondylitis
title Immune cell infiltration-related clinical diagnostic model for Ankylosing Spondylitis
title_full Immune cell infiltration-related clinical diagnostic model for Ankylosing Spondylitis
title_fullStr Immune cell infiltration-related clinical diagnostic model for Ankylosing Spondylitis
title_full_unstemmed Immune cell infiltration-related clinical diagnostic model for Ankylosing Spondylitis
title_short Immune cell infiltration-related clinical diagnostic model for Ankylosing Spondylitis
title_sort immune cell infiltration-related clinical diagnostic model for ankylosing spondylitis
topic Genetics
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9575679/
https://www.ncbi.nlm.nih.gov/pubmed/36263434
http://dx.doi.org/10.3389/fgene.2022.949882
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