Cargando…

Ferroptosis regulator FANCD2 is associated with immune infiltration and predicts worse prognosis in lung adenocarcinoma

Lung adenocarcinoma (LUAD) remains one of the leading causes of cancer-related death. Although immunotherapy has been shown to improve survival in LUAD patients, only a select group of LUAD patients could benefit from it. The correlation between ferroptosis and the tumor immune environment requires...

Descripción completa

Detalles Bibliográficos
Autores principales: Ye, Chenyang, Lu, Yier, Yuan, Zhijun, Mi, Mi, Qi, Lina, Yuan, Ying, Weng, Shanshan
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Frontiers Media S.A. 2022
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9576926/
https://www.ncbi.nlm.nih.gov/pubmed/36267413
http://dx.doi.org/10.3389/fgene.2022.922914
_version_ 1784811638948364288
author Ye, Chenyang
Lu, Yier
Yuan, Zhijun
Mi, Mi
Qi, Lina
Yuan, Ying
Weng, Shanshan
author_facet Ye, Chenyang
Lu, Yier
Yuan, Zhijun
Mi, Mi
Qi, Lina
Yuan, Ying
Weng, Shanshan
author_sort Ye, Chenyang
collection PubMed
description Lung adenocarcinoma (LUAD) remains one of the leading causes of cancer-related death. Although immunotherapy has been shown to improve survival in LUAD patients, only a select group of LUAD patients could benefit from it. The correlation between ferroptosis and the tumor immune environment requires further investigation in the setting of LUAD. An analysis using The Cancer Genome Atlas (TCGA)-LUAD cohort systematically evaluated the expression levels of ferroptosis regulators between LUAD and normal tissues and demonstrated the correlation of ferroptosis regulators with the immune checkpoint B7-H3 expression. Based on consensus clustering analysis, we divided LUAD patients into two subtypes according to the expression pattern of ferroptosis regulators. Cluster 2 patients showed more favorable overall survival (OS) (p < 0.001) and disease-free survival (DFS) (p < 0.001) than Cluster 1 patients. CIBERSORT analysis indicated that Cluster 1 patients harbored higher infiltrated levels of uncharacterized cells, CD4(+) T cells (nonregulatory), and myeloid dendritic cells, while Cluster 2 patients were more correlated with B cells, M1 macrophages, natural killer cells (NK cells) and regulatory T cells (Tregs). More importantly, we identified FANCD2 as a potentially unfavorable prognostic factor that was overexpressed in LUAD and positively associated with the checkpoint molecule B7-H3 expression. In addition, higher FANCD2 expression was related to a higher tumor immune dysfunction and exclusion (TIDE) score, indicating lower responder rates to cancer immunotherapeutics. In summary, our study suggested a relationship between immune infiltration and ferroptosis and that FANCD2 is a potential biomarker for clinical outcomes and a therapeutic target for LUAD therapy concerning ferroptotic regulation. Our findings may help to advance personalized treatment and improve the prognosis of LUAD.
format Online
Article
Text
id pubmed-9576926
institution National Center for Biotechnology Information
language English
publishDate 2022
publisher Frontiers Media S.A.
record_format MEDLINE/PubMed
spelling pubmed-95769262022-10-19 Ferroptosis regulator FANCD2 is associated with immune infiltration and predicts worse prognosis in lung adenocarcinoma Ye, Chenyang Lu, Yier Yuan, Zhijun Mi, Mi Qi, Lina Yuan, Ying Weng, Shanshan Front Genet Genetics Lung adenocarcinoma (LUAD) remains one of the leading causes of cancer-related death. Although immunotherapy has been shown to improve survival in LUAD patients, only a select group of LUAD patients could benefit from it. The correlation between ferroptosis and the tumor immune environment requires further investigation in the setting of LUAD. An analysis using The Cancer Genome Atlas (TCGA)-LUAD cohort systematically evaluated the expression levels of ferroptosis regulators between LUAD and normal tissues and demonstrated the correlation of ferroptosis regulators with the immune checkpoint B7-H3 expression. Based on consensus clustering analysis, we divided LUAD patients into two subtypes according to the expression pattern of ferroptosis regulators. Cluster 2 patients showed more favorable overall survival (OS) (p < 0.001) and disease-free survival (DFS) (p < 0.001) than Cluster 1 patients. CIBERSORT analysis indicated that Cluster 1 patients harbored higher infiltrated levels of uncharacterized cells, CD4(+) T cells (nonregulatory), and myeloid dendritic cells, while Cluster 2 patients were more correlated with B cells, M1 macrophages, natural killer cells (NK cells) and regulatory T cells (Tregs). More importantly, we identified FANCD2 as a potentially unfavorable prognostic factor that was overexpressed in LUAD and positively associated with the checkpoint molecule B7-H3 expression. In addition, higher FANCD2 expression was related to a higher tumor immune dysfunction and exclusion (TIDE) score, indicating lower responder rates to cancer immunotherapeutics. In summary, our study suggested a relationship between immune infiltration and ferroptosis and that FANCD2 is a potential biomarker for clinical outcomes and a therapeutic target for LUAD therapy concerning ferroptotic regulation. Our findings may help to advance personalized treatment and improve the prognosis of LUAD. Frontiers Media S.A. 2022-10-04 /pmc/articles/PMC9576926/ /pubmed/36267413 http://dx.doi.org/10.3389/fgene.2022.922914 Text en Copyright © 2022 Ye, Lu, Yuan, Mi, Qi, Yuan and Weng. https://creativecommons.org/licenses/by/4.0/This is an open-access article distributed under the terms of the Creative Commons Attribution License (CC BY). The use, distribution or reproduction in other forums is permitted, provided the original author(s) and the copyright owner(s) are credited and that the original publication in this journal is cited, in accordance with accepted academic practice. No use, distribution or reproduction is permitted which does not comply with these terms.
spellingShingle Genetics
Ye, Chenyang
Lu, Yier
Yuan, Zhijun
Mi, Mi
Qi, Lina
Yuan, Ying
Weng, Shanshan
Ferroptosis regulator FANCD2 is associated with immune infiltration and predicts worse prognosis in lung adenocarcinoma
title Ferroptosis regulator FANCD2 is associated with immune infiltration and predicts worse prognosis in lung adenocarcinoma
title_full Ferroptosis regulator FANCD2 is associated with immune infiltration and predicts worse prognosis in lung adenocarcinoma
title_fullStr Ferroptosis regulator FANCD2 is associated with immune infiltration and predicts worse prognosis in lung adenocarcinoma
title_full_unstemmed Ferroptosis regulator FANCD2 is associated with immune infiltration and predicts worse prognosis in lung adenocarcinoma
title_short Ferroptosis regulator FANCD2 is associated with immune infiltration and predicts worse prognosis in lung adenocarcinoma
title_sort ferroptosis regulator fancd2 is associated with immune infiltration and predicts worse prognosis in lung adenocarcinoma
topic Genetics
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9576926/
https://www.ncbi.nlm.nih.gov/pubmed/36267413
http://dx.doi.org/10.3389/fgene.2022.922914
work_keys_str_mv AT yechenyang ferroptosisregulatorfancd2isassociatedwithimmuneinfiltrationandpredictsworseprognosisinlungadenocarcinoma
AT luyier ferroptosisregulatorfancd2isassociatedwithimmuneinfiltrationandpredictsworseprognosisinlungadenocarcinoma
AT yuanzhijun ferroptosisregulatorfancd2isassociatedwithimmuneinfiltrationandpredictsworseprognosisinlungadenocarcinoma
AT mimi ferroptosisregulatorfancd2isassociatedwithimmuneinfiltrationandpredictsworseprognosisinlungadenocarcinoma
AT qilina ferroptosisregulatorfancd2isassociatedwithimmuneinfiltrationandpredictsworseprognosisinlungadenocarcinoma
AT yuanying ferroptosisregulatorfancd2isassociatedwithimmuneinfiltrationandpredictsworseprognosisinlungadenocarcinoma
AT wengshanshan ferroptosisregulatorfancd2isassociatedwithimmuneinfiltrationandpredictsworseprognosisinlungadenocarcinoma