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Genome-wide identification, characterization and expression of HSP 20 gene family in dove
Davidia involucrata is a significant living fossil with high abiotic stress tolerance. Although heat shock protein 20 (HSP20) has already been linked to heat stress, nothing is known about HSP20 family protein activities in D. involucrata. The functional dynamics of the D. involucrata HSP20 (DiHSP20...
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Formato: | Online Artículo Texto |
Lenguaje: | English |
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Frontiers Media S.A.
2022
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Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9576933/ https://www.ncbi.nlm.nih.gov/pubmed/36267407 http://dx.doi.org/10.3389/fgene.2022.1011676 |
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author | Hou, Zhe Li, Ang Huang, Changbing |
author_facet | Hou, Zhe Li, Ang Huang, Changbing |
author_sort | Hou, Zhe |
collection | PubMed |
description | Davidia involucrata is a significant living fossil with high abiotic stress tolerance. Although heat shock protein 20 (HSP20) has already been linked to heat stress, nothing is known about HSP20 family protein activities in D. involucrata. The functional dynamics of the D. involucrata HSP20 (DiHSP20) gene family were identified and characterized using a thorough genome-wide investigation. From the genome of D. involucrata, a total of 42 HSP20 genes were identified, which are distributed across 16 chromosomes. The DiHSP20 proteins were grouped into seven separate subfamilies by our phylogenetic analysis, which was validated by the conserved motif composition and gene structure studies. Segmental duplication events were shown to play a crucial role in the expansion of the DiHSP20 gene family. Synteny analysis revealed that 19 DiHSP20 genes of D. involucrata shared a syntenic connection with Arabidopsis genes, 39 with C. acuminata genes, and just 6 with O. sativa genes. Additionally, heat stress differently enhanced the expression levels of D. involucrata HSP20 genes. After 1 hour of heat treatment, the expression levels of most DiHSP20 genes, particularly DiHSP20-7, DiHSP20-29, DiHSP20-30, DiHSP20-32, and DiHSP20-34, were dramatically increased, suggestted that they might be employed as heat tolerance candidate genes. Overall, these findings add to our knowledge of the HSP20 family genes and provide helpful information for breeding heat stress resistance in D. involucrata. |
format | Online Article Text |
id | pubmed-9576933 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2022 |
publisher | Frontiers Media S.A. |
record_format | MEDLINE/PubMed |
spelling | pubmed-95769332022-10-19 Genome-wide identification, characterization and expression of HSP 20 gene family in dove Hou, Zhe Li, Ang Huang, Changbing Front Genet Genetics Davidia involucrata is a significant living fossil with high abiotic stress tolerance. Although heat shock protein 20 (HSP20) has already been linked to heat stress, nothing is known about HSP20 family protein activities in D. involucrata. The functional dynamics of the D. involucrata HSP20 (DiHSP20) gene family were identified and characterized using a thorough genome-wide investigation. From the genome of D. involucrata, a total of 42 HSP20 genes were identified, which are distributed across 16 chromosomes. The DiHSP20 proteins were grouped into seven separate subfamilies by our phylogenetic analysis, which was validated by the conserved motif composition and gene structure studies. Segmental duplication events were shown to play a crucial role in the expansion of the DiHSP20 gene family. Synteny analysis revealed that 19 DiHSP20 genes of D. involucrata shared a syntenic connection with Arabidopsis genes, 39 with C. acuminata genes, and just 6 with O. sativa genes. Additionally, heat stress differently enhanced the expression levels of D. involucrata HSP20 genes. After 1 hour of heat treatment, the expression levels of most DiHSP20 genes, particularly DiHSP20-7, DiHSP20-29, DiHSP20-30, DiHSP20-32, and DiHSP20-34, were dramatically increased, suggestted that they might be employed as heat tolerance candidate genes. Overall, these findings add to our knowledge of the HSP20 family genes and provide helpful information for breeding heat stress resistance in D. involucrata. Frontiers Media S.A. 2022-10-04 /pmc/articles/PMC9576933/ /pubmed/36267407 http://dx.doi.org/10.3389/fgene.2022.1011676 Text en Copyright © 2022 Hou, Li and Huang. https://creativecommons.org/licenses/by/4.0/This is an open-access article distributed under the terms of the Creative Commons Attribution License (CC BY). The use, distribution or reproduction in other forums is permitted, provided the original author(s) and the copyright owner(s) are credited and that the original publication in this journal is cited, in accordance with accepted academic practice. No use, distribution or reproduction is permitted which does not comply with these terms. |
spellingShingle | Genetics Hou, Zhe Li, Ang Huang, Changbing Genome-wide identification, characterization and expression of HSP 20 gene family in dove |
title | Genome-wide identification, characterization and expression of HSP 20 gene family in dove |
title_full | Genome-wide identification, characterization and expression of HSP 20 gene family in dove |
title_fullStr | Genome-wide identification, characterization and expression of HSP 20 gene family in dove |
title_full_unstemmed | Genome-wide identification, characterization and expression of HSP 20 gene family in dove |
title_short | Genome-wide identification, characterization and expression of HSP 20 gene family in dove |
title_sort | genome-wide identification, characterization and expression of hsp 20 gene family in dove |
topic | Genetics |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9576933/ https://www.ncbi.nlm.nih.gov/pubmed/36267407 http://dx.doi.org/10.3389/fgene.2022.1011676 |
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