Cargando…
Identification of the bZIP gene family and regulation of metabolites under salt stress in isatis indigotica
The bZIP transcription factor family plays important roles in plant growth and development, response to stress, and regulation of secondary metabolite biosynthesis. The identification and molecular function of bZIP gene have been deeply studied in the model plant Arabidopsis thaliana, but it has not...
Autores principales: | , , , , , , , |
---|---|
Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Frontiers Media S.A.
2022
|
Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9576947/ https://www.ncbi.nlm.nih.gov/pubmed/36267941 http://dx.doi.org/10.3389/fpls.2022.1011616 |
_version_ | 1784811644206972928 |
---|---|
author | Jiang, Ming Wang, Zhen Ren, Weichao Yan, Song Xing, Nannan Zhang, Zhanping Li, Hui Ma, Wei |
author_facet | Jiang, Ming Wang, Zhen Ren, Weichao Yan, Song Xing, Nannan Zhang, Zhanping Li, Hui Ma, Wei |
author_sort | Jiang, Ming |
collection | PubMed |
description | The bZIP transcription factor family plays important roles in plant growth and development, response to stress, and regulation of secondary metabolite biosynthesis. The identification and molecular function of bZIP gene have been deeply studied in the model plant Arabidopsis thaliana, but it has not been reported in the medicinal plant Isatis indigotica. In this study, 65 IibZIP genes were identified in the genome of I. indigotica, which were distributed on seven chromosomes, were highly conserved, could be classified into 11 subgroups. Transcriptomic and metabolomic data for leaves of I. indigotica exposed to salt stress were analyzed to construct an IibZIP gene co-expression network and metabolite correlation network. Seventeen IibZIP genes were co-expressed with 79 transcription factors, and GO and KEGG enrichment analysis showed that most of these genes were associated with abiotic stress and hormone responses of plants. 17 IibZIP genes regulated 110 metabolites through 92 transcription factor associations. In addition, IibZIP23, IibZIP38 and IibZIP51 were associated with six metabolites including three alkaloids (quinoline alkaloid stylopine, indole alkaloids tabersonine and indole-3-acetic acid), flavonoid myricetin 3-O-galactoside, and two primary metabolites 2-hydroxy-6-aminopurine, 3-dehydroshikimic acid were strongly correlated. This study provides data for identification of the IibZIP gene family and their regulation of metabolites in response to salt stress. |
format | Online Article Text |
id | pubmed-9576947 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2022 |
publisher | Frontiers Media S.A. |
record_format | MEDLINE/PubMed |
spelling | pubmed-95769472022-10-19 Identification of the bZIP gene family and regulation of metabolites under salt stress in isatis indigotica Jiang, Ming Wang, Zhen Ren, Weichao Yan, Song Xing, Nannan Zhang, Zhanping Li, Hui Ma, Wei Front Plant Sci Plant Science The bZIP transcription factor family plays important roles in plant growth and development, response to stress, and regulation of secondary metabolite biosynthesis. The identification and molecular function of bZIP gene have been deeply studied in the model plant Arabidopsis thaliana, but it has not been reported in the medicinal plant Isatis indigotica. In this study, 65 IibZIP genes were identified in the genome of I. indigotica, which were distributed on seven chromosomes, were highly conserved, could be classified into 11 subgroups. Transcriptomic and metabolomic data for leaves of I. indigotica exposed to salt stress were analyzed to construct an IibZIP gene co-expression network and metabolite correlation network. Seventeen IibZIP genes were co-expressed with 79 transcription factors, and GO and KEGG enrichment analysis showed that most of these genes were associated with abiotic stress and hormone responses of plants. 17 IibZIP genes regulated 110 metabolites through 92 transcription factor associations. In addition, IibZIP23, IibZIP38 and IibZIP51 were associated with six metabolites including three alkaloids (quinoline alkaloid stylopine, indole alkaloids tabersonine and indole-3-acetic acid), flavonoid myricetin 3-O-galactoside, and two primary metabolites 2-hydroxy-6-aminopurine, 3-dehydroshikimic acid were strongly correlated. This study provides data for identification of the IibZIP gene family and their regulation of metabolites in response to salt stress. Frontiers Media S.A. 2022-10-04 /pmc/articles/PMC9576947/ /pubmed/36267941 http://dx.doi.org/10.3389/fpls.2022.1011616 Text en Copyright © 2022 Jiang, Wang, Ren, Yan, Xing, Zhang, Li and Ma https://creativecommons.org/licenses/by/4.0/This is an open-access article distributed under the terms of the Creative Commons Attribution License (CC BY). The use, distribution or reproduction in other forums is permitted, provided the original author(s) and the copyright owner(s) are credited and that the original publication in this journal is cited, in accordance with accepted academic practice. No use, distribution or reproduction is permitted which does not comply with these terms. |
spellingShingle | Plant Science Jiang, Ming Wang, Zhen Ren, Weichao Yan, Song Xing, Nannan Zhang, Zhanping Li, Hui Ma, Wei Identification of the bZIP gene family and regulation of metabolites under salt stress in isatis indigotica |
title | Identification of the bZIP gene family and regulation of metabolites under salt stress in isatis indigotica
|
title_full | Identification of the bZIP gene family and regulation of metabolites under salt stress in isatis indigotica
|
title_fullStr | Identification of the bZIP gene family and regulation of metabolites under salt stress in isatis indigotica
|
title_full_unstemmed | Identification of the bZIP gene family and regulation of metabolites under salt stress in isatis indigotica
|
title_short | Identification of the bZIP gene family and regulation of metabolites under salt stress in isatis indigotica
|
title_sort | identification of the bzip gene family and regulation of metabolites under salt stress in isatis indigotica |
topic | Plant Science |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9576947/ https://www.ncbi.nlm.nih.gov/pubmed/36267941 http://dx.doi.org/10.3389/fpls.2022.1011616 |
work_keys_str_mv | AT jiangming identificationofthebzipgenefamilyandregulationofmetabolitesundersaltstressinisatisindigotica AT wangzhen identificationofthebzipgenefamilyandregulationofmetabolitesundersaltstressinisatisindigotica AT renweichao identificationofthebzipgenefamilyandregulationofmetabolitesundersaltstressinisatisindigotica AT yansong identificationofthebzipgenefamilyandregulationofmetabolitesundersaltstressinisatisindigotica AT xingnannan identificationofthebzipgenefamilyandregulationofmetabolitesundersaltstressinisatisindigotica AT zhangzhanping identificationofthebzipgenefamilyandregulationofmetabolitesundersaltstressinisatisindigotica AT lihui identificationofthebzipgenefamilyandregulationofmetabolitesundersaltstressinisatisindigotica AT mawei identificationofthebzipgenefamilyandregulationofmetabolitesundersaltstressinisatisindigotica |