Cargando…
Whole slide image data utilization informed by digital diagnosis patterns
CONTEXT: Despite the benefits of digital pathology, data storage and management of digital whole slide images introduces new logistical and infrastructure challenges to traditionally analog pathology labs. AIMS: Our goal was to analyze pathologist slide diagnosis patterns to determine the minimum nu...
Autores principales: | , , , , , , , |
---|---|
Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Elsevier
2022
|
Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9577055/ https://www.ncbi.nlm.nih.gov/pubmed/36268057 http://dx.doi.org/10.1016/j.jpi.2022.100113 |
_version_ | 1784811671052615680 |
---|---|
author | Ashman, Kimberly Zhuge, Huimin Shanley, Erin Fox, Sharon Halat, Shams Sholl, Andrew Summa, Brian Brown, J. Quincy |
author_facet | Ashman, Kimberly Zhuge, Huimin Shanley, Erin Fox, Sharon Halat, Shams Sholl, Andrew Summa, Brian Brown, J. Quincy |
author_sort | Ashman, Kimberly |
collection | PubMed |
description | CONTEXT: Despite the benefits of digital pathology, data storage and management of digital whole slide images introduces new logistical and infrastructure challenges to traditionally analog pathology labs. AIMS: Our goal was to analyze pathologist slide diagnosis patterns to determine the minimum number of pixels required during the diagnosis. METHODS: We developed a method of using pathologist viewing patterns to vary digital image resolution across virtual slides, which we call variable resolution images. An additional pathologist reviewed the variable resolution images to determine if diagnoses could still be rendered. RESULTS: Across all slides, the pathologists rarely zoomed in to the full resolution level. As a result, the variable resolution images are significantly smaller than the original whole slide images. Despite the reduction in image sizes, the final pathologist reviewer could still proide diagnoses on the variable resolution slide images. CONCLUSIONS: Future studies will be conducted to understand variability in resolution requirements between and within pathologists. These findings have the potential to dramatically reduce the data storage requirements of high-resolution whole slide images. |
format | Online Article Text |
id | pubmed-9577055 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2022 |
publisher | Elsevier |
record_format | MEDLINE/PubMed |
spelling | pubmed-95770552022-10-19 Whole slide image data utilization informed by digital diagnosis patterns Ashman, Kimberly Zhuge, Huimin Shanley, Erin Fox, Sharon Halat, Shams Sholl, Andrew Summa, Brian Brown, J. Quincy J Pathol Inform Original Research Article CONTEXT: Despite the benefits of digital pathology, data storage and management of digital whole slide images introduces new logistical and infrastructure challenges to traditionally analog pathology labs. AIMS: Our goal was to analyze pathologist slide diagnosis patterns to determine the minimum number of pixels required during the diagnosis. METHODS: We developed a method of using pathologist viewing patterns to vary digital image resolution across virtual slides, which we call variable resolution images. An additional pathologist reviewed the variable resolution images to determine if diagnoses could still be rendered. RESULTS: Across all slides, the pathologists rarely zoomed in to the full resolution level. As a result, the variable resolution images are significantly smaller than the original whole slide images. Despite the reduction in image sizes, the final pathologist reviewer could still proide diagnoses on the variable resolution slide images. CONCLUSIONS: Future studies will be conducted to understand variability in resolution requirements between and within pathologists. These findings have the potential to dramatically reduce the data storage requirements of high-resolution whole slide images. Elsevier 2022-06-30 /pmc/articles/PMC9577055/ /pubmed/36268057 http://dx.doi.org/10.1016/j.jpi.2022.100113 Text en © 2022 The Authors https://creativecommons.org/licenses/by-nc-nd/4.0/This is an open access article under the CC BY-NC-ND license (http://creativecommons.org/licenses/by-nc-nd/4.0/). |
spellingShingle | Original Research Article Ashman, Kimberly Zhuge, Huimin Shanley, Erin Fox, Sharon Halat, Shams Sholl, Andrew Summa, Brian Brown, J. Quincy Whole slide image data utilization informed by digital diagnosis patterns |
title | Whole slide image data utilization informed by digital diagnosis patterns |
title_full | Whole slide image data utilization informed by digital diagnosis patterns |
title_fullStr | Whole slide image data utilization informed by digital diagnosis patterns |
title_full_unstemmed | Whole slide image data utilization informed by digital diagnosis patterns |
title_short | Whole slide image data utilization informed by digital diagnosis patterns |
title_sort | whole slide image data utilization informed by digital diagnosis patterns |
topic | Original Research Article |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9577055/ https://www.ncbi.nlm.nih.gov/pubmed/36268057 http://dx.doi.org/10.1016/j.jpi.2022.100113 |
work_keys_str_mv | AT ashmankimberly wholeslideimagedatautilizationinformedbydigitaldiagnosispatterns AT zhugehuimin wholeslideimagedatautilizationinformedbydigitaldiagnosispatterns AT shanleyerin wholeslideimagedatautilizationinformedbydigitaldiagnosispatterns AT foxsharon wholeslideimagedatautilizationinformedbydigitaldiagnosispatterns AT halatshams wholeslideimagedatautilizationinformedbydigitaldiagnosispatterns AT shollandrew wholeslideimagedatautilizationinformedbydigitaldiagnosispatterns AT summabrian wholeslideimagedatautilizationinformedbydigitaldiagnosispatterns AT brownjquincy wholeslideimagedatautilizationinformedbydigitaldiagnosispatterns |