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Whole slide image data utilization informed by digital diagnosis patterns

CONTEXT: Despite the benefits of digital pathology, data storage and management of digital whole slide images introduces new logistical and infrastructure challenges to traditionally analog pathology labs. AIMS: Our goal was to analyze pathologist slide diagnosis patterns to determine the minimum nu...

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Autores principales: Ashman, Kimberly, Zhuge, Huimin, Shanley, Erin, Fox, Sharon, Halat, Shams, Sholl, Andrew, Summa, Brian, Brown, J. Quincy
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Elsevier 2022
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9577055/
https://www.ncbi.nlm.nih.gov/pubmed/36268057
http://dx.doi.org/10.1016/j.jpi.2022.100113
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author Ashman, Kimberly
Zhuge, Huimin
Shanley, Erin
Fox, Sharon
Halat, Shams
Sholl, Andrew
Summa, Brian
Brown, J. Quincy
author_facet Ashman, Kimberly
Zhuge, Huimin
Shanley, Erin
Fox, Sharon
Halat, Shams
Sholl, Andrew
Summa, Brian
Brown, J. Quincy
author_sort Ashman, Kimberly
collection PubMed
description CONTEXT: Despite the benefits of digital pathology, data storage and management of digital whole slide images introduces new logistical and infrastructure challenges to traditionally analog pathology labs. AIMS: Our goal was to analyze pathologist slide diagnosis patterns to determine the minimum number of pixels required during the diagnosis. METHODS: We developed a method of using pathologist viewing patterns to vary digital image resolution across virtual slides, which we call variable resolution images. An additional pathologist reviewed the variable resolution images to determine if diagnoses could still be rendered. RESULTS: Across all slides, the pathologists rarely zoomed in to the full resolution level. As a result, the variable resolution images are significantly smaller than the original whole slide images. Despite the reduction in image sizes, the final pathologist reviewer could still proide diagnoses on the variable resolution slide images. CONCLUSIONS: Future studies will be conducted to understand variability in resolution requirements between and within pathologists. These findings have the potential to dramatically reduce the data storage requirements of high-resolution whole slide images.
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spelling pubmed-95770552022-10-19 Whole slide image data utilization informed by digital diagnosis patterns Ashman, Kimberly Zhuge, Huimin Shanley, Erin Fox, Sharon Halat, Shams Sholl, Andrew Summa, Brian Brown, J. Quincy J Pathol Inform Original Research Article CONTEXT: Despite the benefits of digital pathology, data storage and management of digital whole slide images introduces new logistical and infrastructure challenges to traditionally analog pathology labs. AIMS: Our goal was to analyze pathologist slide diagnosis patterns to determine the minimum number of pixels required during the diagnosis. METHODS: We developed a method of using pathologist viewing patterns to vary digital image resolution across virtual slides, which we call variable resolution images. An additional pathologist reviewed the variable resolution images to determine if diagnoses could still be rendered. RESULTS: Across all slides, the pathologists rarely zoomed in to the full resolution level. As a result, the variable resolution images are significantly smaller than the original whole slide images. Despite the reduction in image sizes, the final pathologist reviewer could still proide diagnoses on the variable resolution slide images. CONCLUSIONS: Future studies will be conducted to understand variability in resolution requirements between and within pathologists. These findings have the potential to dramatically reduce the data storage requirements of high-resolution whole slide images. Elsevier 2022-06-30 /pmc/articles/PMC9577055/ /pubmed/36268057 http://dx.doi.org/10.1016/j.jpi.2022.100113 Text en © 2022 The Authors https://creativecommons.org/licenses/by-nc-nd/4.0/This is an open access article under the CC BY-NC-ND license (http://creativecommons.org/licenses/by-nc-nd/4.0/).
spellingShingle Original Research Article
Ashman, Kimberly
Zhuge, Huimin
Shanley, Erin
Fox, Sharon
Halat, Shams
Sholl, Andrew
Summa, Brian
Brown, J. Quincy
Whole slide image data utilization informed by digital diagnosis patterns
title Whole slide image data utilization informed by digital diagnosis patterns
title_full Whole slide image data utilization informed by digital diagnosis patterns
title_fullStr Whole slide image data utilization informed by digital diagnosis patterns
title_full_unstemmed Whole slide image data utilization informed by digital diagnosis patterns
title_short Whole slide image data utilization informed by digital diagnosis patterns
title_sort whole slide image data utilization informed by digital diagnosis patterns
topic Original Research Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9577055/
https://www.ncbi.nlm.nih.gov/pubmed/36268057
http://dx.doi.org/10.1016/j.jpi.2022.100113
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