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Spatial–Temporal Synchronous Graph Transformer network (STSGT) for COVID-19 forecasting

COVID-19 has become a matter of serious concern over the last few years. It has adversely affected numerous people around the globe and has led to the loss of billions of dollars of business capital. In this paper, we propose a novel Spatial–Temporal Synchronous Graph Transformer network (STSGT) to...

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Detalles Bibliográficos
Autores principales: Banerjee, Soumyanil, Dong, Ming, Shi, Weisong
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Elsevier Inc. 2022
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9577246/
https://www.ncbi.nlm.nih.gov/pubmed/36277841
http://dx.doi.org/10.1016/j.smhl.2022.100348
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author Banerjee, Soumyanil
Dong, Ming
Shi, Weisong
author_facet Banerjee, Soumyanil
Dong, Ming
Shi, Weisong
author_sort Banerjee, Soumyanil
collection PubMed
description COVID-19 has become a matter of serious concern over the last few years. It has adversely affected numerous people around the globe and has led to the loss of billions of dollars of business capital. In this paper, we propose a novel Spatial–Temporal Synchronous Graph Transformer network (STSGT) to capture the complex spatial and temporal dependency of the COVID-19 time series data and forecast the future status of an evolving pandemic. The layers of STSGT combine the graph convolution network (GCN) with the self-attention mechanism of transformers on a synchronous spatial–temporal graph to capture the dynamically changing pattern of the COVID time series. The spatial–temporal synchronous graph simultaneously captures the spatial and temporal dependencies between the vertices of the graph at a given and subsequent time-steps, which helps capture the heterogeneity in the time series and improve the forecasting accuracy. Our extensive experiments on two publicly available real-world COVID-19 time series datasets demonstrate that STSGT significantly outperforms state-of-the-art algorithms that were designed for spatial–temporal forecasting tasks. Specifically, on average over a 12-day horizon, we observe a potential improvement of 12.19% and 3.42% in Mean Absolute Error (MAE) over the next best algorithm while forecasting the daily infected and death cases respectively for the 50 states of US and Washington, D.C. Additionally, STSGT also outperformed others when forecasting the daily infected cases at the state level, e.g., for all the counties in the State of Michigan. The code and models are publicly available at https://github.com/soumbane/STSGT.
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spelling pubmed-95772462022-10-18 Spatial–Temporal Synchronous Graph Transformer network (STSGT) for COVID-19 forecasting Banerjee, Soumyanil Dong, Ming Shi, Weisong Smart Health (Amst) Article COVID-19 has become a matter of serious concern over the last few years. It has adversely affected numerous people around the globe and has led to the loss of billions of dollars of business capital. In this paper, we propose a novel Spatial–Temporal Synchronous Graph Transformer network (STSGT) to capture the complex spatial and temporal dependency of the COVID-19 time series data and forecast the future status of an evolving pandemic. The layers of STSGT combine the graph convolution network (GCN) with the self-attention mechanism of transformers on a synchronous spatial–temporal graph to capture the dynamically changing pattern of the COVID time series. The spatial–temporal synchronous graph simultaneously captures the spatial and temporal dependencies between the vertices of the graph at a given and subsequent time-steps, which helps capture the heterogeneity in the time series and improve the forecasting accuracy. Our extensive experiments on two publicly available real-world COVID-19 time series datasets demonstrate that STSGT significantly outperforms state-of-the-art algorithms that were designed for spatial–temporal forecasting tasks. Specifically, on average over a 12-day horizon, we observe a potential improvement of 12.19% and 3.42% in Mean Absolute Error (MAE) over the next best algorithm while forecasting the daily infected and death cases respectively for the 50 states of US and Washington, D.C. Additionally, STSGT also outperformed others when forecasting the daily infected cases at the state level, e.g., for all the counties in the State of Michigan. The code and models are publicly available at https://github.com/soumbane/STSGT. Elsevier Inc. 2022-12 2022-10-13 /pmc/articles/PMC9577246/ /pubmed/36277841 http://dx.doi.org/10.1016/j.smhl.2022.100348 Text en © 2022 Elsevier Inc. All rights reserved. Since January 2020 Elsevier has created a COVID-19 resource centre with free information in English and Mandarin on the novel coronavirus COVID-19. The COVID-19 resource centre is hosted on Elsevier Connect, the company's public news and information website. Elsevier hereby grants permission to make all its COVID-19-related research that is available on the COVID-19 resource centre - including this research content - immediately available in PubMed Central and other publicly funded repositories, such as the WHO COVID database with rights for unrestricted research re-use and analyses in any form or by any means with acknowledgement of the original source. These permissions are granted for free by Elsevier for as long as the COVID-19 resource centre remains active.
spellingShingle Article
Banerjee, Soumyanil
Dong, Ming
Shi, Weisong
Spatial–Temporal Synchronous Graph Transformer network (STSGT) for COVID-19 forecasting
title Spatial–Temporal Synchronous Graph Transformer network (STSGT) for COVID-19 forecasting
title_full Spatial–Temporal Synchronous Graph Transformer network (STSGT) for COVID-19 forecasting
title_fullStr Spatial–Temporal Synchronous Graph Transformer network (STSGT) for COVID-19 forecasting
title_full_unstemmed Spatial–Temporal Synchronous Graph Transformer network (STSGT) for COVID-19 forecasting
title_short Spatial–Temporal Synchronous Graph Transformer network (STSGT) for COVID-19 forecasting
title_sort spatial–temporal synchronous graph transformer network (stsgt) for covid-19 forecasting
topic Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9577246/
https://www.ncbi.nlm.nih.gov/pubmed/36277841
http://dx.doi.org/10.1016/j.smhl.2022.100348
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