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Identifying the presence and severity of dementia by applying interpretable machine learning techniques on structured clinical records

BACKGROUND: Dementia develops as cognitive abilities deteriorate, and early detection is critical for effective preventive interventions. However, mainstream diagnostic tests and screening tools, such as CAMCOG and MMSE, often fail to detect dementia accurately. Various graph-based or feature-depend...

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Autores principales: Vyas, Akhilesh, Aisopos, Fotis, Vidal, Maria-Esther, Garrard, Peter, Paliouras, Georgios
Formato: Online Artículo Texto
Lenguaje:English
Publicado: BioMed Central 2022
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9578246/
https://www.ncbi.nlm.nih.gov/pubmed/36253849
http://dx.doi.org/10.1186/s12911-022-02004-3
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author Vyas, Akhilesh
Aisopos, Fotis
Vidal, Maria-Esther
Garrard, Peter
Paliouras, Georgios
author_facet Vyas, Akhilesh
Aisopos, Fotis
Vidal, Maria-Esther
Garrard, Peter
Paliouras, Georgios
author_sort Vyas, Akhilesh
collection PubMed
description BACKGROUND: Dementia develops as cognitive abilities deteriorate, and early detection is critical for effective preventive interventions. However, mainstream diagnostic tests and screening tools, such as CAMCOG and MMSE, often fail to detect dementia accurately. Various graph-based or feature-dependent prediction and progression models have been proposed. Whenever these models exploit information in the patients’ Electronic Medical Records, they represent promising options to identify the presence and severity of dementia more precisely. METHODS: The methods presented in this paper aim to address two problems related to dementia: (a) Basic diagnosis: identifying the presence of dementia in individuals, and (b) Severity diagnosis: predicting the presence of dementia, as well as the severity of the disease. We formulate these two tasks as classification problems and address them using machine learning models based on random forests and decision tree, analysing structured clinical data from an elderly population cohort. We perform a hybrid data curation strategy in which a dementia expert is involved to verify that curation decisions are meaningful. We then employ the machine learning algorithms that classify individual episodes into a specific dementia class. Decision trees are also used for enhancing the explainability of decisions made by prediction models, allowing medical experts to identify the most crucial patient features and their threshold values for the classification of dementia. RESULTS: Our experiment results prove that baseline arithmetic or cognitive tests, along with demographic features, can predict dementia and its severity with high accuracy. In specific, our prediction models have reached an average f1-score of 0.93 and 0.81 for problems (a) and (b), respectively. Moreover, the decision trees produced for the two issues empower the interpretability of the prediction models. CONCLUSIONS: This study proves that there can be an accurate estimation of the existence and severity of dementia disease by analysing various electronic medical record features and cognitive tests from the episodes of the elderly population. Moreover, a set of decision rules may comprise the building blocks for an efficient patient classification. Relevant clinical and screening test features (e.g. simple arithmetic or animal fluency tasks) represent precise predictors without calculating the scores of mainstream cognitive tests such as MMSE and CAMCOG. Such predictive model can identify not only meaningful features, but also justifications of classification. As a result, the predictive power of machine learning models over curated clinical data is proved, paving the path for a more accurate diagnosis of dementia. SUPPLEMENTARY INFORMATION: The online version contains supplementary material available at 10.1186/s12911-022-02004-3.
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spelling pubmed-95782462022-10-19 Identifying the presence and severity of dementia by applying interpretable machine learning techniques on structured clinical records Vyas, Akhilesh Aisopos, Fotis Vidal, Maria-Esther Garrard, Peter Paliouras, Georgios BMC Med Inform Decis Mak Research BACKGROUND: Dementia develops as cognitive abilities deteriorate, and early detection is critical for effective preventive interventions. However, mainstream diagnostic tests and screening tools, such as CAMCOG and MMSE, often fail to detect dementia accurately. Various graph-based or feature-dependent prediction and progression models have been proposed. Whenever these models exploit information in the patients’ Electronic Medical Records, they represent promising options to identify the presence and severity of dementia more precisely. METHODS: The methods presented in this paper aim to address two problems related to dementia: (a) Basic diagnosis: identifying the presence of dementia in individuals, and (b) Severity diagnosis: predicting the presence of dementia, as well as the severity of the disease. We formulate these two tasks as classification problems and address them using machine learning models based on random forests and decision tree, analysing structured clinical data from an elderly population cohort. We perform a hybrid data curation strategy in which a dementia expert is involved to verify that curation decisions are meaningful. We then employ the machine learning algorithms that classify individual episodes into a specific dementia class. Decision trees are also used for enhancing the explainability of decisions made by prediction models, allowing medical experts to identify the most crucial patient features and their threshold values for the classification of dementia. RESULTS: Our experiment results prove that baseline arithmetic or cognitive tests, along with demographic features, can predict dementia and its severity with high accuracy. In specific, our prediction models have reached an average f1-score of 0.93 and 0.81 for problems (a) and (b), respectively. Moreover, the decision trees produced for the two issues empower the interpretability of the prediction models. CONCLUSIONS: This study proves that there can be an accurate estimation of the existence and severity of dementia disease by analysing various electronic medical record features and cognitive tests from the episodes of the elderly population. Moreover, a set of decision rules may comprise the building blocks for an efficient patient classification. Relevant clinical and screening test features (e.g. simple arithmetic or animal fluency tasks) represent precise predictors without calculating the scores of mainstream cognitive tests such as MMSE and CAMCOG. Such predictive model can identify not only meaningful features, but also justifications of classification. As a result, the predictive power of machine learning models over curated clinical data is proved, paving the path for a more accurate diagnosis of dementia. SUPPLEMENTARY INFORMATION: The online version contains supplementary material available at 10.1186/s12911-022-02004-3. BioMed Central 2022-10-17 /pmc/articles/PMC9578246/ /pubmed/36253849 http://dx.doi.org/10.1186/s12911-022-02004-3 Text en © The Author(s) 2022 https://creativecommons.org/licenses/by/4.0/Open AccessThis article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons licence, and indicate if changes were made. The images or other third party material in this article are included in the article's Creative Commons licence, unless indicated otherwise in a credit line to the material. If material is not included in the article's Creative Commons licence and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this licence, visit http://creativecommons.org/licenses/by/4.0/ (https://creativecommons.org/licenses/by/4.0/) . The Creative Commons Public Domain Dedication waiver (http://creativecommons.org/publicdomain/zero/1.0/ (https://creativecommons.org/publicdomain/zero/1.0/) ) applies to the data made available in this article, unless otherwise stated in a credit line to the data.
spellingShingle Research
Vyas, Akhilesh
Aisopos, Fotis
Vidal, Maria-Esther
Garrard, Peter
Paliouras, Georgios
Identifying the presence and severity of dementia by applying interpretable machine learning techniques on structured clinical records
title Identifying the presence and severity of dementia by applying interpretable machine learning techniques on structured clinical records
title_full Identifying the presence and severity of dementia by applying interpretable machine learning techniques on structured clinical records
title_fullStr Identifying the presence and severity of dementia by applying interpretable machine learning techniques on structured clinical records
title_full_unstemmed Identifying the presence and severity of dementia by applying interpretable machine learning techniques on structured clinical records
title_short Identifying the presence and severity of dementia by applying interpretable machine learning techniques on structured clinical records
title_sort identifying the presence and severity of dementia by applying interpretable machine learning techniques on structured clinical records
topic Research
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9578246/
https://www.ncbi.nlm.nih.gov/pubmed/36253849
http://dx.doi.org/10.1186/s12911-022-02004-3
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