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Complete plastid genome of Lespedeza tricolor (Fabaceae), an endemic shrub in Korea
Lespedeza tricolor is a species found in the southern province of Korea, thought to be endemic to Korea. The complete plastid genome of this legume was sequenced in this study. DNA from L. tricolor was extracted, sequenced, and assembled into the complete plastid genome. We used 18 species of the fa...
Autores principales: | , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
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Taylor & Francis
2022
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9578480/ https://www.ncbi.nlm.nih.gov/pubmed/36267667 http://dx.doi.org/10.1080/23802359.2022.2130714 |
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author | Kim, Tae-Hee Kim, Sang-Chul Ha, Young-Ho Choi, Kyung Kim, Hyuk-Jin |
author_facet | Kim, Tae-Hee Kim, Sang-Chul Ha, Young-Ho Choi, Kyung Kim, Hyuk-Jin |
author_sort | Kim, Tae-Hee |
collection | PubMed |
description | Lespedeza tricolor is a species found in the southern province of Korea, thought to be endemic to Korea. The complete plastid genome of this legume was sequenced in this study. DNA from L. tricolor was extracted, sequenced, and assembled into the complete plastid genome. We used 18 species of the family Fabaceae and 77 protein-coding genes to perform phylogenetic analysis. The plastid genome is 149,038 bp in length, with large (82,495 bp) and small (18,889 bp) single-copy regions, separated by a pair of inverted repeat regions (23,827 bp). It contains 83 protein-coding genes, eight rRNAs, 37 tRNAs, and two pseudogenes (rpl22 and infA). Our phylogenetic analysis suggests that the genus Lespedeza is monophyletic and L. tricolor is closely related to L. maritima and L. buergeri. In this study, we identified the phylogenetic position of L. tricolor and provided the data that can be used in various ways in future studies. |
format | Online Article Text |
id | pubmed-9578480 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2022 |
publisher | Taylor & Francis |
record_format | MEDLINE/PubMed |
spelling | pubmed-95784802022-10-19 Complete plastid genome of Lespedeza tricolor (Fabaceae), an endemic shrub in Korea Kim, Tae-Hee Kim, Sang-Chul Ha, Young-Ho Choi, Kyung Kim, Hyuk-Jin Mitochondrial DNA B Resour Plastome Announcement Lespedeza tricolor is a species found in the southern province of Korea, thought to be endemic to Korea. The complete plastid genome of this legume was sequenced in this study. DNA from L. tricolor was extracted, sequenced, and assembled into the complete plastid genome. We used 18 species of the family Fabaceae and 77 protein-coding genes to perform phylogenetic analysis. The plastid genome is 149,038 bp in length, with large (82,495 bp) and small (18,889 bp) single-copy regions, separated by a pair of inverted repeat regions (23,827 bp). It contains 83 protein-coding genes, eight rRNAs, 37 tRNAs, and two pseudogenes (rpl22 and infA). Our phylogenetic analysis suggests that the genus Lespedeza is monophyletic and L. tricolor is closely related to L. maritima and L. buergeri. In this study, we identified the phylogenetic position of L. tricolor and provided the data that can be used in various ways in future studies. Taylor & Francis 2022-10-16 /pmc/articles/PMC9578480/ /pubmed/36267667 http://dx.doi.org/10.1080/23802359.2022.2130714 Text en © 2022 The Author(s). Published by Informa UK Limited, trading as Taylor & Francis Group. https://creativecommons.org/licenses/by/4.0/This is an Open Access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/4.0/ (https://creativecommons.org/licenses/by/4.0/) ), which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited. |
spellingShingle | Plastome Announcement Kim, Tae-Hee Kim, Sang-Chul Ha, Young-Ho Choi, Kyung Kim, Hyuk-Jin Complete plastid genome of Lespedeza tricolor (Fabaceae), an endemic shrub in Korea |
title | Complete plastid genome of Lespedeza tricolor (Fabaceae), an endemic shrub in Korea |
title_full | Complete plastid genome of Lespedeza tricolor (Fabaceae), an endemic shrub in Korea |
title_fullStr | Complete plastid genome of Lespedeza tricolor (Fabaceae), an endemic shrub in Korea |
title_full_unstemmed | Complete plastid genome of Lespedeza tricolor (Fabaceae), an endemic shrub in Korea |
title_short | Complete plastid genome of Lespedeza tricolor (Fabaceae), an endemic shrub in Korea |
title_sort | complete plastid genome of lespedeza tricolor (fabaceae), an endemic shrub in korea |
topic | Plastome Announcement |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9578480/ https://www.ncbi.nlm.nih.gov/pubmed/36267667 http://dx.doi.org/10.1080/23802359.2022.2130714 |
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