Cargando…
Phylogenetic analysis and expression profiles of jasmonate ZIM-domain gene family provide insight into abiotic stress resistance in sunflower
Jasmonate ZIM-domain (JAZ) proteins act as inhibitory factors of the jasmonic acid (JA) pathway, which is involved in regulating plant development and defense responses. However, there are no extensive studies available on JAZ genes in sunflower (Helianthus annuus L.). In this study, the phylogeneti...
Autores principales: | , , , , , , , , |
---|---|
Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Frontiers Media S.A.
2022
|
Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9580003/ https://www.ncbi.nlm.nih.gov/pubmed/36275559 http://dx.doi.org/10.3389/fpls.2022.1010404 |
_version_ | 1784812299237720064 |
---|---|
author | Song, Huifang Fu, Xinxuan Li, Juan Niu, Tianzeng Shen, Jie Wang, Xi Li, Yunling Hou, Qinwen Liu, Ake |
author_facet | Song, Huifang Fu, Xinxuan Li, Juan Niu, Tianzeng Shen, Jie Wang, Xi Li, Yunling Hou, Qinwen Liu, Ake |
author_sort | Song, Huifang |
collection | PubMed |
description | Jasmonate ZIM-domain (JAZ) proteins act as inhibitory factors of the jasmonic acid (JA) pathway, which is involved in regulating plant development and defense responses. However, there are no extensive studies available on JAZ genes in sunflower (Helianthus annuus L.). In this study, the phylogenetic analysis of 139 putative JAZ genes from eight plants demonstrated that these JAZs could be divided into five groups (Groups I–V), and the 27 sunflower JAZs (HaJAZs) were classified into these five groups. All groups contained genes from both monocotyledons and dicotyledons, indicating that the emergence of JAZ genes predates the differentiation of monocotyledons and dicotyledons. Both segmental and tandem duplications contributed greatly to this gene family’s expansion in sunflower, especially in Group II. Moreover, the expression profiles of HaJAZ genes under normal conditions, hormone treatments or abiotic stresses were analyzed based on RNA-seq data. HaJAZ2 may be undergoing pseudogenization as a nonfunctional gene because it was not expressed in any tissue. Many HaJAZ genes in roots upregulated their expression when involved in responding to exogenous hormones, especially methyl-jasmonate. The abiotic stress treatments of sunflower showed that HaJAZ5, HaJAZ15, HaJAZ17, HaJAZ20, and HaJAZ21 tend to be sensitive to certain abiotic stresses. HaJAZs from different groups may share similar functions but also exercise their unique functions when responding to abiotic stresses. We speculated that this gene family was conserved in sequence but varied in its expression among duplicated HaJAZ genes, which implies that they may confer neofunctionalization in the adaptation to abiotic stresses; this work provides insight into the resistance of sunflowers and their adaptation to diverse environmental conditions. |
format | Online Article Text |
id | pubmed-9580003 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2022 |
publisher | Frontiers Media S.A. |
record_format | MEDLINE/PubMed |
spelling | pubmed-95800032022-10-20 Phylogenetic analysis and expression profiles of jasmonate ZIM-domain gene family provide insight into abiotic stress resistance in sunflower Song, Huifang Fu, Xinxuan Li, Juan Niu, Tianzeng Shen, Jie Wang, Xi Li, Yunling Hou, Qinwen Liu, Ake Front Plant Sci Plant Science Jasmonate ZIM-domain (JAZ) proteins act as inhibitory factors of the jasmonic acid (JA) pathway, which is involved in regulating plant development and defense responses. However, there are no extensive studies available on JAZ genes in sunflower (Helianthus annuus L.). In this study, the phylogenetic analysis of 139 putative JAZ genes from eight plants demonstrated that these JAZs could be divided into five groups (Groups I–V), and the 27 sunflower JAZs (HaJAZs) were classified into these five groups. All groups contained genes from both monocotyledons and dicotyledons, indicating that the emergence of JAZ genes predates the differentiation of monocotyledons and dicotyledons. Both segmental and tandem duplications contributed greatly to this gene family’s expansion in sunflower, especially in Group II. Moreover, the expression profiles of HaJAZ genes under normal conditions, hormone treatments or abiotic stresses were analyzed based on RNA-seq data. HaJAZ2 may be undergoing pseudogenization as a nonfunctional gene because it was not expressed in any tissue. Many HaJAZ genes in roots upregulated their expression when involved in responding to exogenous hormones, especially methyl-jasmonate. The abiotic stress treatments of sunflower showed that HaJAZ5, HaJAZ15, HaJAZ17, HaJAZ20, and HaJAZ21 tend to be sensitive to certain abiotic stresses. HaJAZs from different groups may share similar functions but also exercise their unique functions when responding to abiotic stresses. We speculated that this gene family was conserved in sequence but varied in its expression among duplicated HaJAZ genes, which implies that they may confer neofunctionalization in the adaptation to abiotic stresses; this work provides insight into the resistance of sunflowers and their adaptation to diverse environmental conditions. Frontiers Media S.A. 2022-10-04 /pmc/articles/PMC9580003/ /pubmed/36275559 http://dx.doi.org/10.3389/fpls.2022.1010404 Text en Copyright © 2022 Song, Fu, Li, Niu, Shen, Wang, Li, Hou and Liu. https://creativecommons.org/licenses/by/4.0/This is an open-access article distributed under the terms of the Creative Commons Attribution License (CC BY). The use, distribution or reproduction in other forums is permitted, provided the original author(s) and the copyright owner(s) are credited and that the original publication in this journal is cited, in accordance with accepted academic practice. No use, distribution or reproduction is permitted which does not comply with these terms. |
spellingShingle | Plant Science Song, Huifang Fu, Xinxuan Li, Juan Niu, Tianzeng Shen, Jie Wang, Xi Li, Yunling Hou, Qinwen Liu, Ake Phylogenetic analysis and expression profiles of jasmonate ZIM-domain gene family provide insight into abiotic stress resistance in sunflower |
title | Phylogenetic analysis and expression profiles of jasmonate ZIM-domain gene family provide insight into abiotic stress resistance in sunflower |
title_full | Phylogenetic analysis and expression profiles of jasmonate ZIM-domain gene family provide insight into abiotic stress resistance in sunflower |
title_fullStr | Phylogenetic analysis and expression profiles of jasmonate ZIM-domain gene family provide insight into abiotic stress resistance in sunflower |
title_full_unstemmed | Phylogenetic analysis and expression profiles of jasmonate ZIM-domain gene family provide insight into abiotic stress resistance in sunflower |
title_short | Phylogenetic analysis and expression profiles of jasmonate ZIM-domain gene family provide insight into abiotic stress resistance in sunflower |
title_sort | phylogenetic analysis and expression profiles of jasmonate zim-domain gene family provide insight into abiotic stress resistance in sunflower |
topic | Plant Science |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9580003/ https://www.ncbi.nlm.nih.gov/pubmed/36275559 http://dx.doi.org/10.3389/fpls.2022.1010404 |
work_keys_str_mv | AT songhuifang phylogeneticanalysisandexpressionprofilesofjasmonatezimdomaingenefamilyprovideinsightintoabioticstressresistanceinsunflower AT fuxinxuan phylogeneticanalysisandexpressionprofilesofjasmonatezimdomaingenefamilyprovideinsightintoabioticstressresistanceinsunflower AT lijuan phylogeneticanalysisandexpressionprofilesofjasmonatezimdomaingenefamilyprovideinsightintoabioticstressresistanceinsunflower AT niutianzeng phylogeneticanalysisandexpressionprofilesofjasmonatezimdomaingenefamilyprovideinsightintoabioticstressresistanceinsunflower AT shenjie phylogeneticanalysisandexpressionprofilesofjasmonatezimdomaingenefamilyprovideinsightintoabioticstressresistanceinsunflower AT wangxi phylogeneticanalysisandexpressionprofilesofjasmonatezimdomaingenefamilyprovideinsightintoabioticstressresistanceinsunflower AT liyunling phylogeneticanalysisandexpressionprofilesofjasmonatezimdomaingenefamilyprovideinsightintoabioticstressresistanceinsunflower AT houqinwen phylogeneticanalysisandexpressionprofilesofjasmonatezimdomaingenefamilyprovideinsightintoabioticstressresistanceinsunflower AT liuake phylogeneticanalysisandexpressionprofilesofjasmonatezimdomaingenefamilyprovideinsightintoabioticstressresistanceinsunflower |