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DLC1 deficiency at diagnosis predicts poor prognosis in acute myeloid leukemia

Acute myeloid leukemia (AML) is a complex, heterogeneous malignant hematologic disease. Although multiple prognostic-related genes gave been explored in previous studies, there are still many genes whose prognostic value remains unclear. In this study, a total of 1532 AML patients from three GEO dat...

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Autores principales: Li, Xueqian, Qi, Jiaqian, Song, Xiaofei, Xu, Xiaoyan, Pan, Tingting, Wang, Hong, Yang, Jingyi, Han, Yue
Formato: Online Artículo Texto
Lenguaje:English
Publicado: BioMed Central 2022
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9580124/
https://www.ncbi.nlm.nih.gov/pubmed/36258263
http://dx.doi.org/10.1186/s40164-022-00335-5
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author Li, Xueqian
Qi, Jiaqian
Song, Xiaofei
Xu, Xiaoyan
Pan, Tingting
Wang, Hong
Yang, Jingyi
Han, Yue
author_facet Li, Xueqian
Qi, Jiaqian
Song, Xiaofei
Xu, Xiaoyan
Pan, Tingting
Wang, Hong
Yang, Jingyi
Han, Yue
author_sort Li, Xueqian
collection PubMed
description Acute myeloid leukemia (AML) is a complex, heterogeneous malignant hematologic disease. Although multiple prognostic-related genes gave been explored in previous studies, there are still many genes whose prognostic value remains unclear. In this study, a total of 1532 AML patients from three GEO databases were included, five genes with potential prognostic value (DLC1, NF1B, DENND5B, TANC2 and ELAVL4) were screened by weighted gene co-expression network analysis (WGCNA), least absolute shrinkage and selection operator (LASSO) and support vector machine recursive feature elimination (SVM-RFE). Based on this, we conducted survival analysis of the above five genes through the TCGA database and found that low level of DLC1 was detrimental to the long-term prognosis of AML patients. We also performed external validation in 48 AML patients from our medical center to analyze the impact of DLC1 level on prognosis. In conclusion, DLC1 may be a potential marker affecting the prognosis of AML, and its deficiency is associated with poor prognosis. SUPPLEMENTARY INFORMATION: The online version contains supplementary material available at 10.1186/s40164-022-00335-5.
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spelling pubmed-95801242022-10-20 DLC1 deficiency at diagnosis predicts poor prognosis in acute myeloid leukemia Li, Xueqian Qi, Jiaqian Song, Xiaofei Xu, Xiaoyan Pan, Tingting Wang, Hong Yang, Jingyi Han, Yue Exp Hematol Oncol Correspondence Acute myeloid leukemia (AML) is a complex, heterogeneous malignant hematologic disease. Although multiple prognostic-related genes gave been explored in previous studies, there are still many genes whose prognostic value remains unclear. In this study, a total of 1532 AML patients from three GEO databases were included, five genes with potential prognostic value (DLC1, NF1B, DENND5B, TANC2 and ELAVL4) were screened by weighted gene co-expression network analysis (WGCNA), least absolute shrinkage and selection operator (LASSO) and support vector machine recursive feature elimination (SVM-RFE). Based on this, we conducted survival analysis of the above five genes through the TCGA database and found that low level of DLC1 was detrimental to the long-term prognosis of AML patients. We also performed external validation in 48 AML patients from our medical center to analyze the impact of DLC1 level on prognosis. In conclusion, DLC1 may be a potential marker affecting the prognosis of AML, and its deficiency is associated with poor prognosis. SUPPLEMENTARY INFORMATION: The online version contains supplementary material available at 10.1186/s40164-022-00335-5. BioMed Central 2022-10-18 /pmc/articles/PMC9580124/ /pubmed/36258263 http://dx.doi.org/10.1186/s40164-022-00335-5 Text en © The Author(s) 2022 https://creativecommons.org/licenses/by/4.0/Open AccessThis article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons licence, and indicate if changes were made. The images or other third party material in this article are included in the article's Creative Commons licence, unless indicated otherwise in a credit line to the material. If material is not included in the article's Creative Commons licence and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this licence, visit http://creativecommons.org/licenses/by/4.0/ (https://creativecommons.org/licenses/by/4.0/) . The Creative Commons Public Domain Dedication waiver (http://creativecommons.org/publicdomain/zero/1.0/ (https://creativecommons.org/publicdomain/zero/1.0/) ) applies to the data made available in this article, unless otherwise stated in a credit line to the data.
spellingShingle Correspondence
Li, Xueqian
Qi, Jiaqian
Song, Xiaofei
Xu, Xiaoyan
Pan, Tingting
Wang, Hong
Yang, Jingyi
Han, Yue
DLC1 deficiency at diagnosis predicts poor prognosis in acute myeloid leukemia
title DLC1 deficiency at diagnosis predicts poor prognosis in acute myeloid leukemia
title_full DLC1 deficiency at diagnosis predicts poor prognosis in acute myeloid leukemia
title_fullStr DLC1 deficiency at diagnosis predicts poor prognosis in acute myeloid leukemia
title_full_unstemmed DLC1 deficiency at diagnosis predicts poor prognosis in acute myeloid leukemia
title_short DLC1 deficiency at diagnosis predicts poor prognosis in acute myeloid leukemia
title_sort dlc1 deficiency at diagnosis predicts poor prognosis in acute myeloid leukemia
topic Correspondence
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9580124/
https://www.ncbi.nlm.nih.gov/pubmed/36258263
http://dx.doi.org/10.1186/s40164-022-00335-5
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