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Characterization of glucose metabolism in breast cancer to guide clinical therapy
BACKGROUND: Breast cancer (BRCA) ranks as a leading cause of cancer death in women worldwide. Glucose metabolism is a noticeable characteristic of the occurrence of malignant tumors. In this study, we aimed to construct a novel glycometabolism-related gene (GRG) signature to predict overall survival...
Autores principales: | , , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Frontiers Media S.A.
2022
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9580338/ https://www.ncbi.nlm.nih.gov/pubmed/36277284 http://dx.doi.org/10.3389/fsurg.2022.973410 |
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author | Mei, Yingying Zhao, Lantao Jiang, Man Yang, Fangfang Zhang, Xiaochun Jia, Yizhen Zhou, Na |
author_facet | Mei, Yingying Zhao, Lantao Jiang, Man Yang, Fangfang Zhang, Xiaochun Jia, Yizhen Zhou, Na |
author_sort | Mei, Yingying |
collection | PubMed |
description | BACKGROUND: Breast cancer (BRCA) ranks as a leading cause of cancer death in women worldwide. Glucose metabolism is a noticeable characteristic of the occurrence of malignant tumors. In this study, we aimed to construct a novel glycometabolism-related gene (GRG) signature to predict overall survival (OS), immune infiltration and therapeutic response in BRCA patients. MATERIALS AND METHODS: The mRNA sequencing and corresponding clinical data of BRCA patients were obtained from public cohorts. Lasso regression was applied to establish a GRG signature. The immune infiltration was evaluated with the ESTIMATE and CIBERSORT algorithms. The drug sensitivity was estimated using the value of IC50, and further forecasted the therapeutic response of each patient. The candidate target was selected in Cytoscape. A nomogram was constructed via the R package of “rms”. RESULTS: We constructed a six-GRG signature based on CACNA1H, CHPF, IRS2, NT5E, SDC1 and ATP6AP1, and the high-risk patients were correlated with poorer OS (P = 2.515 × 10(−7)). M2 macrophage infiltration was considerably superior in high-risk patients, and CD8(+) T cell infiltration was significantly higher in low-risk patients. Additionally, the high-risk group was more sensitive to Lapatinib. Fortunately, SDC1 was recognized as candidate target and patients had a better OS in the low-SDC1 group. A nomogram integrating the GRG signature was developed, and calibration curves were consistent between the actual and predicted OS. CONCLUSIONS: We identified a novel GRG signature complementing the present understanding of the targeted therapy and immune biomarker in breast cancer. The GRGs may provide fresh insights for individualized management of BRCA patients. |
format | Online Article Text |
id | pubmed-9580338 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2022 |
publisher | Frontiers Media S.A. |
record_format | MEDLINE/PubMed |
spelling | pubmed-95803382022-10-20 Characterization of glucose metabolism in breast cancer to guide clinical therapy Mei, Yingying Zhao, Lantao Jiang, Man Yang, Fangfang Zhang, Xiaochun Jia, Yizhen Zhou, Na Front Surg Surgery BACKGROUND: Breast cancer (BRCA) ranks as a leading cause of cancer death in women worldwide. Glucose metabolism is a noticeable characteristic of the occurrence of malignant tumors. In this study, we aimed to construct a novel glycometabolism-related gene (GRG) signature to predict overall survival (OS), immune infiltration and therapeutic response in BRCA patients. MATERIALS AND METHODS: The mRNA sequencing and corresponding clinical data of BRCA patients were obtained from public cohorts. Lasso regression was applied to establish a GRG signature. The immune infiltration was evaluated with the ESTIMATE and CIBERSORT algorithms. The drug sensitivity was estimated using the value of IC50, and further forecasted the therapeutic response of each patient. The candidate target was selected in Cytoscape. A nomogram was constructed via the R package of “rms”. RESULTS: We constructed a six-GRG signature based on CACNA1H, CHPF, IRS2, NT5E, SDC1 and ATP6AP1, and the high-risk patients were correlated with poorer OS (P = 2.515 × 10(−7)). M2 macrophage infiltration was considerably superior in high-risk patients, and CD8(+) T cell infiltration was significantly higher in low-risk patients. Additionally, the high-risk group was more sensitive to Lapatinib. Fortunately, SDC1 was recognized as candidate target and patients had a better OS in the low-SDC1 group. A nomogram integrating the GRG signature was developed, and calibration curves were consistent between the actual and predicted OS. CONCLUSIONS: We identified a novel GRG signature complementing the present understanding of the targeted therapy and immune biomarker in breast cancer. The GRGs may provide fresh insights for individualized management of BRCA patients. Frontiers Media S.A. 2022-09-19 /pmc/articles/PMC9580338/ /pubmed/36277284 http://dx.doi.org/10.3389/fsurg.2022.973410 Text en © 2022 Mei, Zhao, Jiang, Yang, Zhang, Jia and Zhou. https://creativecommons.org/licenses/by/4.0/This is an open-access article distributed under the terms of the Creative Commons Attribution License (CC BY) (https://creativecommons.org/licenses/by/4.0/) . The use, distribution or reproduction in other forums is permitted, provided the original author(s) and the copyright owner(s) are credited and that the original publication in this journal is cited, in accordance with accepted academic practice. No use, distribution or reproduction is permitted which does not comply with these terms. |
spellingShingle | Surgery Mei, Yingying Zhao, Lantao Jiang, Man Yang, Fangfang Zhang, Xiaochun Jia, Yizhen Zhou, Na Characterization of glucose metabolism in breast cancer to guide clinical therapy |
title | Characterization of glucose metabolism in breast cancer to guide clinical therapy |
title_full | Characterization of glucose metabolism in breast cancer to guide clinical therapy |
title_fullStr | Characterization of glucose metabolism in breast cancer to guide clinical therapy |
title_full_unstemmed | Characterization of glucose metabolism in breast cancer to guide clinical therapy |
title_short | Characterization of glucose metabolism in breast cancer to guide clinical therapy |
title_sort | characterization of glucose metabolism in breast cancer to guide clinical therapy |
topic | Surgery |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9580338/ https://www.ncbi.nlm.nih.gov/pubmed/36277284 http://dx.doi.org/10.3389/fsurg.2022.973410 |
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