ApE, A Plasmid Editor: A Freely Available DNA Manipulation and Visualization Program

A plasmid Editor (ApE) is a free, multi-platform application for visualizing, designing, and presenting biologically relevant DNA sequences. ApE provides a flexible framework for annotating a sequence manually or using a user-defined library of features. ApE can be used in designing plasmids and oth...

Descripción completa

Detalles Bibliográficos
Autores principales: Davis, M. Wayne, Jorgensen, Erik M.
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Frontiers Media S.A. 2022
Materias:
Bioinformatics
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9580900/
https://www.ncbi.nlm.nih.gov/pubmed/36304290
http://dx.doi.org/10.3389/fbinf.2022.818619
_version_ 1784812496666755072
author Davis, M. Wayne
Jorgensen, Erik M.
author_facet Davis, M. Wayne
Jorgensen, Erik M.
author_sort Davis, M. Wayne
collection PubMed
description A plasmid Editor (ApE) is a free, multi-platform application for visualizing, designing, and presenting biologically relevant DNA sequences. ApE provides a flexible framework for annotating a sequence manually or using a user-defined library of features. ApE can be used in designing plasmids and other constructs via in silico simulation of cloning methods such as PCR, Gibson assembly, restriction-ligation assembly and Golden Gate assembly. In addition, ApE provides a platform for creating visually appealing linear and circular plasmid maps. It is available for Mac, PC, and Linux-based platforms and can be downloaded at https://jorgensen.biology.utah.edu/wayned/ape/.
format Online
Article
Text
id pubmed-9580900
institution National Center for Biotechnology Information
language English
publishDate 2022
publisher Frontiers Media S.A.
record_format MEDLINE/PubMed
spelling pubmed-95809002022-10-26 ApE, A Plasmid Editor: A Freely Available DNA Manipulation and Visualization Program Davis, M. Wayne Jorgensen, Erik M. Front Bioinform Bioinformatics A plasmid Editor (ApE) is a free, multi-platform application for visualizing, designing, and presenting biologically relevant DNA sequences. ApE provides a flexible framework for annotating a sequence manually or using a user-defined library of features. ApE can be used in designing plasmids and other constructs via in silico simulation of cloning methods such as PCR, Gibson assembly, restriction-ligation assembly and Golden Gate assembly. In addition, ApE provides a platform for creating visually appealing linear and circular plasmid maps. It is available for Mac, PC, and Linux-based platforms and can be downloaded at https://jorgensen.biology.utah.edu/wayned/ape/. Frontiers Media S.A. 2022-02-04 /pmc/articles/PMC9580900/ /pubmed/36304290 http://dx.doi.org/10.3389/fbinf.2022.818619 Text en Copyright © 2022 Davis and Jorgensen. https://creativecommons.org/licenses/by/4.0/This is an open-access article distributed under the terms of the Creative Commons Attribution License (CC BY). The use, distribution or reproduction in other forums is permitted, provided the original author(s) and the copyright owner(s) are credited and that the original publication in this journal is cited, in accordance with accepted academic practice. No use, distribution or reproduction is permitted which does not comply with these terms.
spellingShingle Bioinformatics
Davis, M. Wayne
Jorgensen, Erik M.
ApE, A Plasmid Editor: A Freely Available DNA Manipulation and Visualization Program
title ApE, A Plasmid Editor: A Freely Available DNA Manipulation and Visualization Program
title_full ApE, A Plasmid Editor: A Freely Available DNA Manipulation and Visualization Program
title_fullStr ApE, A Plasmid Editor: A Freely Available DNA Manipulation and Visualization Program
title_full_unstemmed ApE, A Plasmid Editor: A Freely Available DNA Manipulation and Visualization Program
title_short ApE, A Plasmid Editor: A Freely Available DNA Manipulation and Visualization Program
title_sort ape, a plasmid editor: a freely available dna manipulation and visualization program
topic Bioinformatics
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9580900/
https://www.ncbi.nlm.nih.gov/pubmed/36304290
http://dx.doi.org/10.3389/fbinf.2022.818619
work_keys_str_mv AT davismwayne apeaplasmideditorafreelyavailablednamanipulationandvisualizationprogram
AT jorgensenerikm apeaplasmideditorafreelyavailablednamanipulationandvisualizationprogram

Ejemplares similares