Cargando…

A Mechanistic Site-Of-Action Model: A Tool for Informing Right Target, Right Compound, And Right Dose for Therapeutic Antagonistic Antibody Programs

Quantitative modeling is increasingly utilized in the drug discovery and development process, from the initial stages of target selection, through clinical studies. The modeling can provide guidance on three major questions–is this the right target, what are the right compound properties, and what i...

Descripción completa

Detalles Bibliográficos
Autores principales: Kapitanov, Georgi I., Chabot, Jeffrey R., Narula, Jatin, Roy, Mahua, Neubert, Hendrik, Palandra, Joe, Farrokhi, Vahid, Johnson, Jay S., Webster, Robert, Jones, Hannah M.
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Frontiers Media S.A. 2021
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9581070/
https://www.ncbi.nlm.nih.gov/pubmed/36303796
http://dx.doi.org/10.3389/fbinf.2021.731340
_version_ 1784812535638130688
author Kapitanov, Georgi I.
Chabot, Jeffrey R.
Narula, Jatin
Roy, Mahua
Neubert, Hendrik
Palandra, Joe
Farrokhi, Vahid
Johnson, Jay S.
Webster, Robert
Jones, Hannah M.
author_facet Kapitanov, Georgi I.
Chabot, Jeffrey R.
Narula, Jatin
Roy, Mahua
Neubert, Hendrik
Palandra, Joe
Farrokhi, Vahid
Johnson, Jay S.
Webster, Robert
Jones, Hannah M.
author_sort Kapitanov, Georgi I.
collection PubMed
description Quantitative modeling is increasingly utilized in the drug discovery and development process, from the initial stages of target selection, through clinical studies. The modeling can provide guidance on three major questions–is this the right target, what are the right compound properties, and what is the right dose for moving the best possible candidate forward. In this manuscript, we present a site-of-action modeling framework which we apply to monoclonal antibodies against soluble targets. We give a comprehensive overview of how we construct the model and how we parametrize it and include several examples of how to apply this framework for answering the questions postulated above. The utilities and limitations of this approach are discussed.
format Online
Article
Text
id pubmed-9581070
institution National Center for Biotechnology Information
language English
publishDate 2021
publisher Frontiers Media S.A.
record_format MEDLINE/PubMed
spelling pubmed-95810702022-10-26 A Mechanistic Site-Of-Action Model: A Tool for Informing Right Target, Right Compound, And Right Dose for Therapeutic Antagonistic Antibody Programs Kapitanov, Georgi I. Chabot, Jeffrey R. Narula, Jatin Roy, Mahua Neubert, Hendrik Palandra, Joe Farrokhi, Vahid Johnson, Jay S. Webster, Robert Jones, Hannah M. Front Bioinform Bioinformatics Quantitative modeling is increasingly utilized in the drug discovery and development process, from the initial stages of target selection, through clinical studies. The modeling can provide guidance on three major questions–is this the right target, what are the right compound properties, and what is the right dose for moving the best possible candidate forward. In this manuscript, we present a site-of-action modeling framework which we apply to monoclonal antibodies against soluble targets. We give a comprehensive overview of how we construct the model and how we parametrize it and include several examples of how to apply this framework for answering the questions postulated above. The utilities and limitations of this approach are discussed. Frontiers Media S.A. 2021-09-03 /pmc/articles/PMC9581070/ /pubmed/36303796 http://dx.doi.org/10.3389/fbinf.2021.731340 Text en Copyright © 2021 Kapitanov, Chabot, Narula, Roy, Neubert, Palandra, Farrokhi, Johnson, Webster and Jones. https://creativecommons.org/licenses/by/4.0/This is an open-access article distributed under the terms of the Creative Commons Attribution License (CC BY). The use, distribution or reproduction in other forums is permitted, provided the original author(s) and the copyright owner(s) are credited and that the original publication in this journal is cited, in accordance with accepted academic practice. No use, distribution or reproduction is permitted which does not comply with these terms.
spellingShingle Bioinformatics
Kapitanov, Georgi I.
Chabot, Jeffrey R.
Narula, Jatin
Roy, Mahua
Neubert, Hendrik
Palandra, Joe
Farrokhi, Vahid
Johnson, Jay S.
Webster, Robert
Jones, Hannah M.
A Mechanistic Site-Of-Action Model: A Tool for Informing Right Target, Right Compound, And Right Dose for Therapeutic Antagonistic Antibody Programs
title A Mechanistic Site-Of-Action Model: A Tool for Informing Right Target, Right Compound, And Right Dose for Therapeutic Antagonistic Antibody Programs
title_full A Mechanistic Site-Of-Action Model: A Tool for Informing Right Target, Right Compound, And Right Dose for Therapeutic Antagonistic Antibody Programs
title_fullStr A Mechanistic Site-Of-Action Model: A Tool for Informing Right Target, Right Compound, And Right Dose for Therapeutic Antagonistic Antibody Programs
title_full_unstemmed A Mechanistic Site-Of-Action Model: A Tool for Informing Right Target, Right Compound, And Right Dose for Therapeutic Antagonistic Antibody Programs
title_short A Mechanistic Site-Of-Action Model: A Tool for Informing Right Target, Right Compound, And Right Dose for Therapeutic Antagonistic Antibody Programs
title_sort mechanistic site-of-action model: a tool for informing right target, right compound, and right dose for therapeutic antagonistic antibody programs
topic Bioinformatics
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9581070/
https://www.ncbi.nlm.nih.gov/pubmed/36303796
http://dx.doi.org/10.3389/fbinf.2021.731340
work_keys_str_mv AT kapitanovgeorgii amechanisticsiteofactionmodelatoolforinformingrighttargetrightcompoundandrightdosefortherapeuticantagonisticantibodyprograms
AT chabotjeffreyr amechanisticsiteofactionmodelatoolforinformingrighttargetrightcompoundandrightdosefortherapeuticantagonisticantibodyprograms
AT narulajatin amechanisticsiteofactionmodelatoolforinformingrighttargetrightcompoundandrightdosefortherapeuticantagonisticantibodyprograms
AT roymahua amechanisticsiteofactionmodelatoolforinformingrighttargetrightcompoundandrightdosefortherapeuticantagonisticantibodyprograms
AT neuberthendrik amechanisticsiteofactionmodelatoolforinformingrighttargetrightcompoundandrightdosefortherapeuticantagonisticantibodyprograms
AT palandrajoe amechanisticsiteofactionmodelatoolforinformingrighttargetrightcompoundandrightdosefortherapeuticantagonisticantibodyprograms
AT farrokhivahid amechanisticsiteofactionmodelatoolforinformingrighttargetrightcompoundandrightdosefortherapeuticantagonisticantibodyprograms
AT johnsonjays amechanisticsiteofactionmodelatoolforinformingrighttargetrightcompoundandrightdosefortherapeuticantagonisticantibodyprograms
AT websterrobert amechanisticsiteofactionmodelatoolforinformingrighttargetrightcompoundandrightdosefortherapeuticantagonisticantibodyprograms
AT joneshannahm amechanisticsiteofactionmodelatoolforinformingrighttargetrightcompoundandrightdosefortherapeuticantagonisticantibodyprograms
AT kapitanovgeorgii mechanisticsiteofactionmodelatoolforinformingrighttargetrightcompoundandrightdosefortherapeuticantagonisticantibodyprograms
AT chabotjeffreyr mechanisticsiteofactionmodelatoolforinformingrighttargetrightcompoundandrightdosefortherapeuticantagonisticantibodyprograms
AT narulajatin mechanisticsiteofactionmodelatoolforinformingrighttargetrightcompoundandrightdosefortherapeuticantagonisticantibodyprograms
AT roymahua mechanisticsiteofactionmodelatoolforinformingrighttargetrightcompoundandrightdosefortherapeuticantagonisticantibodyprograms
AT neuberthendrik mechanisticsiteofactionmodelatoolforinformingrighttargetrightcompoundandrightdosefortherapeuticantagonisticantibodyprograms
AT palandrajoe mechanisticsiteofactionmodelatoolforinformingrighttargetrightcompoundandrightdosefortherapeuticantagonisticantibodyprograms
AT farrokhivahid mechanisticsiteofactionmodelatoolforinformingrighttargetrightcompoundandrightdosefortherapeuticantagonisticantibodyprograms
AT johnsonjays mechanisticsiteofactionmodelatoolforinformingrighttargetrightcompoundandrightdosefortherapeuticantagonisticantibodyprograms
AT websterrobert mechanisticsiteofactionmodelatoolforinformingrighttargetrightcompoundandrightdosefortherapeuticantagonisticantibodyprograms
AT joneshannahm mechanisticsiteofactionmodelatoolforinformingrighttargetrightcompoundandrightdosefortherapeuticantagonisticantibodyprograms