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Blood transcriptome analysis: Ferroptosis and potential inflammatory pathways in post-traumatic stress disorder

BACKGROUND: Transcriptome-wide analysis of peripheral blood in post-traumatic stress disorder (PTSD) indicates widespread changes in immune-related pathways and function. Ferroptosis, an iron-dependent regulated cell death, is closely related to oxidative stress. However, little is known as to wheth...

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Autores principales: Zhu, Jie, Zhang, Ye, Ren, Rong, Sanford, Larry D., Tang, Xiangdong
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Frontiers Media S.A. 2022
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9581323/
https://www.ncbi.nlm.nih.gov/pubmed/36276334
http://dx.doi.org/10.3389/fpsyt.2022.841999
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author Zhu, Jie
Zhang, Ye
Ren, Rong
Sanford, Larry D.
Tang, Xiangdong
author_facet Zhu, Jie
Zhang, Ye
Ren, Rong
Sanford, Larry D.
Tang, Xiangdong
author_sort Zhu, Jie
collection PubMed
description BACKGROUND: Transcriptome-wide analysis of peripheral blood in post-traumatic stress disorder (PTSD) indicates widespread changes in immune-related pathways and function. Ferroptosis, an iron-dependent regulated cell death, is closely related to oxidative stress. However, little is known as to whether ferroptosis plays a role in PTSD. METHODS: We conducted a comprehensive analysis of combined data from six independent peripheral blood transcriptional studies in the Gene Expression Omnibus (GEO) database, covering PTSD and control individuals. Differentially expressed genes (DEGs) were extracted by comparing PTSD patients with control individuals, from which 29 ferroptosis-related genes (FRGs) were cross-matched and obtained. The weighted gene co-expression network analysis (WGCNA), the Extreme Gradient Boosting (XGBoost) model with Bayesian Optimization, and the least absolute shrinkage and selection operator (LASSO) Cox regression were utilized to construct a PTSD prediction model. Single-sample Gene Set Enrichment Analysis (ssGSEA) and CIBERSORT revealed the disturbed immunologic state in PTSD high-risk patients. RESULTS: Three crucial FRGs (ACSL4, ACO1, and GSS) were identified and used to establish a predictive model of PTSD. The receiver operating characteristic (ROC) curve verifies its risk prediction ability. Remarkably, ssGSEA and CIBERSORT demonstrated changes in cellular immunity and antigen presentation depending on the FRGs model. CONCLUSION: These findings collectively provide evidence that ferroptosis may change immune status in PTSD and be related to the occurrence of PTSD, which may help delineate mechanisms and discover treatment biomarkers for PTSD.
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spelling pubmed-95813232022-10-20 Blood transcriptome analysis: Ferroptosis and potential inflammatory pathways in post-traumatic stress disorder Zhu, Jie Zhang, Ye Ren, Rong Sanford, Larry D. Tang, Xiangdong Front Psychiatry Psychiatry BACKGROUND: Transcriptome-wide analysis of peripheral blood in post-traumatic stress disorder (PTSD) indicates widespread changes in immune-related pathways and function. Ferroptosis, an iron-dependent regulated cell death, is closely related to oxidative stress. However, little is known as to whether ferroptosis plays a role in PTSD. METHODS: We conducted a comprehensive analysis of combined data from six independent peripheral blood transcriptional studies in the Gene Expression Omnibus (GEO) database, covering PTSD and control individuals. Differentially expressed genes (DEGs) were extracted by comparing PTSD patients with control individuals, from which 29 ferroptosis-related genes (FRGs) were cross-matched and obtained. The weighted gene co-expression network analysis (WGCNA), the Extreme Gradient Boosting (XGBoost) model with Bayesian Optimization, and the least absolute shrinkage and selection operator (LASSO) Cox regression were utilized to construct a PTSD prediction model. Single-sample Gene Set Enrichment Analysis (ssGSEA) and CIBERSORT revealed the disturbed immunologic state in PTSD high-risk patients. RESULTS: Three crucial FRGs (ACSL4, ACO1, and GSS) were identified and used to establish a predictive model of PTSD. The receiver operating characteristic (ROC) curve verifies its risk prediction ability. Remarkably, ssGSEA and CIBERSORT demonstrated changes in cellular immunity and antigen presentation depending on the FRGs model. CONCLUSION: These findings collectively provide evidence that ferroptosis may change immune status in PTSD and be related to the occurrence of PTSD, which may help delineate mechanisms and discover treatment biomarkers for PTSD. Frontiers Media S.A. 2022-10-05 /pmc/articles/PMC9581323/ /pubmed/36276334 http://dx.doi.org/10.3389/fpsyt.2022.841999 Text en Copyright © 2022 Zhu, Zhang, Ren, Sanford and Tang. https://creativecommons.org/licenses/by/4.0/This is an open-access article distributed under the terms of the Creative Commons Attribution License (CC BY). The use, distribution or reproduction in other forums is permitted, provided the original author(s) and the copyright owner(s) are credited and that the original publication in this journal is cited, in accordance with accepted academic practice. No use, distribution or reproduction is permitted which does not comply with these terms.
spellingShingle Psychiatry
Zhu, Jie
Zhang, Ye
Ren, Rong
Sanford, Larry D.
Tang, Xiangdong
Blood transcriptome analysis: Ferroptosis and potential inflammatory pathways in post-traumatic stress disorder
title Blood transcriptome analysis: Ferroptosis and potential inflammatory pathways in post-traumatic stress disorder
title_full Blood transcriptome analysis: Ferroptosis and potential inflammatory pathways in post-traumatic stress disorder
title_fullStr Blood transcriptome analysis: Ferroptosis and potential inflammatory pathways in post-traumatic stress disorder
title_full_unstemmed Blood transcriptome analysis: Ferroptosis and potential inflammatory pathways in post-traumatic stress disorder
title_short Blood transcriptome analysis: Ferroptosis and potential inflammatory pathways in post-traumatic stress disorder
title_sort blood transcriptome analysis: ferroptosis and potential inflammatory pathways in post-traumatic stress disorder
topic Psychiatry
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9581323/
https://www.ncbi.nlm.nih.gov/pubmed/36276334
http://dx.doi.org/10.3389/fpsyt.2022.841999
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