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Five immune-related genes as diagnostic markers for endometriosis and their correlation with immune infiltration
Endometriosis (EMS) is a chronic disease that can cause dysmenorrhea, chronic pelvic pain, and infertility, among other symptoms. EMS diagnosis is often delayed compared to other chronic diseases, and there are currently no accurate, easily accessible, and non-invasive diagnostic tools. Therefore, i...
Autores principales: | , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
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Frontiers Media S.A.
2022
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9582281/ https://www.ncbi.nlm.nih.gov/pubmed/36277723 http://dx.doi.org/10.3389/fendo.2022.1011742 |
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author | Huang, Yi Li, Qiong Hu, Rui Li, Ruiyun Yang, Yuan |
author_facet | Huang, Yi Li, Qiong Hu, Rui Li, Ruiyun Yang, Yuan |
author_sort | Huang, Yi |
collection | PubMed |
description | Endometriosis (EMS) is a chronic disease that can cause dysmenorrhea, chronic pelvic pain, and infertility, among other symptoms. EMS diagnosis is often delayed compared to other chronic diseases, and there are currently no accurate, easily accessible, and non-invasive diagnostic tools. Therefore, it is important to elucidate the mechanism of EMS and explore potential biomarkers and diagnostic tools for its accurate diagnosis and treatment. In the present study, we comprehensively analyzed the differential expression, immune infiltration, and interactions of EMS-related genes in three Homo sapiens datasets. Our results identified 332 differentially expressed genes (DEGs) associated with EMS. Gene ontology analysis showed that these changes mainly focused on the positive regulation of endometrial cell proliferation, cell metabolism, and extracellular space, and EMS involved the integrin, complement activation, folic acid metabolism, interleukin, and lipid signaling pathways. The LASSO regression model was established using immune DEGs with an area under the curve of 0.783 for the internal dataset and 0.656 for the external dataset. Five genes with diagnostic value, ACKR1, LMNB1, MFAP4, NMU, and SEMA3C, were screened from M1 and M2 macrophages, activated mast cells, neutrophils, natural killer cells, follicular T helper cells, CD8(+), and CD4(+) cells. A protein−protein interaction network based on the immune DEGs was constructed, and ten hub genes with the highest scores were identified. Our results may provide a framework for the development of pathological molecular networks in EMS. |
format | Online Article Text |
id | pubmed-9582281 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2022 |
publisher | Frontiers Media S.A. |
record_format | MEDLINE/PubMed |
spelling | pubmed-95822812022-10-21 Five immune-related genes as diagnostic markers for endometriosis and their correlation with immune infiltration Huang, Yi Li, Qiong Hu, Rui Li, Ruiyun Yang, Yuan Front Endocrinol (Lausanne) Endocrinology Endometriosis (EMS) is a chronic disease that can cause dysmenorrhea, chronic pelvic pain, and infertility, among other symptoms. EMS diagnosis is often delayed compared to other chronic diseases, and there are currently no accurate, easily accessible, and non-invasive diagnostic tools. Therefore, it is important to elucidate the mechanism of EMS and explore potential biomarkers and diagnostic tools for its accurate diagnosis and treatment. In the present study, we comprehensively analyzed the differential expression, immune infiltration, and interactions of EMS-related genes in three Homo sapiens datasets. Our results identified 332 differentially expressed genes (DEGs) associated with EMS. Gene ontology analysis showed that these changes mainly focused on the positive regulation of endometrial cell proliferation, cell metabolism, and extracellular space, and EMS involved the integrin, complement activation, folic acid metabolism, interleukin, and lipid signaling pathways. The LASSO regression model was established using immune DEGs with an area under the curve of 0.783 for the internal dataset and 0.656 for the external dataset. Five genes with diagnostic value, ACKR1, LMNB1, MFAP4, NMU, and SEMA3C, were screened from M1 and M2 macrophages, activated mast cells, neutrophils, natural killer cells, follicular T helper cells, CD8(+), and CD4(+) cells. A protein−protein interaction network based on the immune DEGs was constructed, and ten hub genes with the highest scores were identified. Our results may provide a framework for the development of pathological molecular networks in EMS. Frontiers Media S.A. 2022-10-06 /pmc/articles/PMC9582281/ /pubmed/36277723 http://dx.doi.org/10.3389/fendo.2022.1011742 Text en Copyright © 2022 Huang, Li, Hu, Li and Yang https://creativecommons.org/licenses/by/4.0/This is an open-access article distributed under the terms of the Creative Commons Attribution License (CC BY). The use, distribution or reproduction in other forums is permitted, provided the original author(s) and the copyright owner(s) are credited and that the original publication in this journal is cited, in accordance with accepted academic practice. No use, distribution or reproduction is permitted which does not comply with these terms. |
spellingShingle | Endocrinology Huang, Yi Li, Qiong Hu, Rui Li, Ruiyun Yang, Yuan Five immune-related genes as diagnostic markers for endometriosis and their correlation with immune infiltration |
title | Five immune-related genes as diagnostic markers for endometriosis and their correlation with immune infiltration |
title_full | Five immune-related genes as diagnostic markers for endometriosis and their correlation with immune infiltration |
title_fullStr | Five immune-related genes as diagnostic markers for endometriosis and their correlation with immune infiltration |
title_full_unstemmed | Five immune-related genes as diagnostic markers for endometriosis and their correlation with immune infiltration |
title_short | Five immune-related genes as diagnostic markers for endometriosis and their correlation with immune infiltration |
title_sort | five immune-related genes as diagnostic markers for endometriosis and their correlation with immune infiltration |
topic | Endocrinology |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9582281/ https://www.ncbi.nlm.nih.gov/pubmed/36277723 http://dx.doi.org/10.3389/fendo.2022.1011742 |
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