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The relationship between radiomics and pathomics in Glioblastoma patients: Preliminary results from a cross-scale association study
Glioblastoma multiforme (GBM) typically exhibits substantial intratumoral heterogeneity at both microscopic and radiological resolution scales. Diffusion Weighted Imaging (DWI) and dynamic contrast-enhanced (DCE) magnetic resonance imaging (MRI) are two functional MRI techniques that are commonly em...
Autores principales: | , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
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Frontiers Media S.A.
2022
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9582951/ https://www.ncbi.nlm.nih.gov/pubmed/36276163 http://dx.doi.org/10.3389/fonc.2022.1005805 |
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author | Brancato, Valentina Cavaliere, Carlo Garbino, Nunzia Isgrò, Francesco Salvatore, Marco Aiello, Marco |
author_facet | Brancato, Valentina Cavaliere, Carlo Garbino, Nunzia Isgrò, Francesco Salvatore, Marco Aiello, Marco |
author_sort | Brancato, Valentina |
collection | PubMed |
description | Glioblastoma multiforme (GBM) typically exhibits substantial intratumoral heterogeneity at both microscopic and radiological resolution scales. Diffusion Weighted Imaging (DWI) and dynamic contrast-enhanced (DCE) magnetic resonance imaging (MRI) are two functional MRI techniques that are commonly employed in clinic for the assessment of GBM tumor characteristics. This work presents initial results aiming at determining if radiomics features extracted from preoperative ADC maps and post-contrast T1 (T1C) images are associated with pathomic features arising from H&E digitized pathology images. 48 patients from the public available CPTAC-GBM database, for which both radiology and pathology images were available, were involved in the study. 91 radiomics features were extracted from ADC maps and post-contrast T1 images using PyRadiomics. 65 pathomic features were extracted from cell detection measurements from H&E images. Moreover, 91 features were extracted from cell density maps of H&E images at four different resolutions. Radiopathomic associations were evaluated by means of Spearman’s correlation (ρ) and factor analysis. p values were adjusted for multiple correlations by using a false discovery rate adjustment. Significant cross-scale associations were identified between pathomics and ADC, both considering features (n = 186, 0.45 < ρ < 0.74 in absolute value) and factors (n = 5, 0.48 < ρ < 0.54 in absolute value). Significant but fewer ρ values were found concerning the association between pathomics and radiomics features (n = 53, 0.5 < ρ < 0.65 in absolute value) and factors (n = 2, ρ = 0.63 and ρ = 0.53 in absolute value). The results of this study suggest that cross-scale associations may exist between digital pathology and ADC and T1C imaging. This can be useful not only to improve the knowledge concerning GBM intratumoral heterogeneity, but also to strengthen the role of radiomics approach and its validation in clinical practice as “virtual biopsy”, introducing new insights for omics integration toward a personalized medicine approach. |
format | Online Article Text |
id | pubmed-9582951 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2022 |
publisher | Frontiers Media S.A. |
record_format | MEDLINE/PubMed |
spelling | pubmed-95829512022-10-21 The relationship between radiomics and pathomics in Glioblastoma patients: Preliminary results from a cross-scale association study Brancato, Valentina Cavaliere, Carlo Garbino, Nunzia Isgrò, Francesco Salvatore, Marco Aiello, Marco Front Oncol Oncology Glioblastoma multiforme (GBM) typically exhibits substantial intratumoral heterogeneity at both microscopic and radiological resolution scales. Diffusion Weighted Imaging (DWI) and dynamic contrast-enhanced (DCE) magnetic resonance imaging (MRI) are two functional MRI techniques that are commonly employed in clinic for the assessment of GBM tumor characteristics. This work presents initial results aiming at determining if radiomics features extracted from preoperative ADC maps and post-contrast T1 (T1C) images are associated with pathomic features arising from H&E digitized pathology images. 48 patients from the public available CPTAC-GBM database, for which both radiology and pathology images were available, were involved in the study. 91 radiomics features were extracted from ADC maps and post-contrast T1 images using PyRadiomics. 65 pathomic features were extracted from cell detection measurements from H&E images. Moreover, 91 features were extracted from cell density maps of H&E images at four different resolutions. Radiopathomic associations were evaluated by means of Spearman’s correlation (ρ) and factor analysis. p values were adjusted for multiple correlations by using a false discovery rate adjustment. Significant cross-scale associations were identified between pathomics and ADC, both considering features (n = 186, 0.45 < ρ < 0.74 in absolute value) and factors (n = 5, 0.48 < ρ < 0.54 in absolute value). Significant but fewer ρ values were found concerning the association between pathomics and radiomics features (n = 53, 0.5 < ρ < 0.65 in absolute value) and factors (n = 2, ρ = 0.63 and ρ = 0.53 in absolute value). The results of this study suggest that cross-scale associations may exist between digital pathology and ADC and T1C imaging. This can be useful not only to improve the knowledge concerning GBM intratumoral heterogeneity, but also to strengthen the role of radiomics approach and its validation in clinical practice as “virtual biopsy”, introducing new insights for omics integration toward a personalized medicine approach. Frontiers Media S.A. 2022-10-06 /pmc/articles/PMC9582951/ /pubmed/36276163 http://dx.doi.org/10.3389/fonc.2022.1005805 Text en Copyright © 2022 Brancato, Cavaliere, Garbino, Isgrò, Salvatore and Aiello https://creativecommons.org/licenses/by/4.0/This is an open-access article distributed under the terms of the Creative Commons Attribution License (CC BY). The use, distribution or reproduction in other forums is permitted, provided the original author(s) and the copyright owner(s) are credited and that the original publication in this journal is cited, in accordance with accepted academic practice. No use, distribution or reproduction is permitted which does not comply with these terms. |
spellingShingle | Oncology Brancato, Valentina Cavaliere, Carlo Garbino, Nunzia Isgrò, Francesco Salvatore, Marco Aiello, Marco The relationship between radiomics and pathomics in Glioblastoma patients: Preliminary results from a cross-scale association study |
title | The relationship between radiomics and pathomics in Glioblastoma patients: Preliminary results from a cross-scale association study |
title_full | The relationship between radiomics and pathomics in Glioblastoma patients: Preliminary results from a cross-scale association study |
title_fullStr | The relationship between radiomics and pathomics in Glioblastoma patients: Preliminary results from a cross-scale association study |
title_full_unstemmed | The relationship between radiomics and pathomics in Glioblastoma patients: Preliminary results from a cross-scale association study |
title_short | The relationship between radiomics and pathomics in Glioblastoma patients: Preliminary results from a cross-scale association study |
title_sort | relationship between radiomics and pathomics in glioblastoma patients: preliminary results from a cross-scale association study |
topic | Oncology |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9582951/ https://www.ncbi.nlm.nih.gov/pubmed/36276163 http://dx.doi.org/10.3389/fonc.2022.1005805 |
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