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Turning up a new pattern: Identification of cancer-associated fibroblast-related clusters in TNBC
Growing evidence indicates a connection between cancer-associated fibroblasts (CAFs) and tumor microenvironment (TME) remodeling and tumor progression. Nevertheless, how patterns of CAFs impact TME and immunotherapy responsiveness in triple-negative breast cancer (TNBC) remains unclear. Here, we sys...
Autores principales: | , , , , , , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
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Frontiers Media S.A.
2022
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9583405/ https://www.ncbi.nlm.nih.gov/pubmed/36275659 http://dx.doi.org/10.3389/fimmu.2022.1022147 |
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author | Xie, Jindong Zheng, Shaoquan Zou, Yutian Tang, Yuhui Tian, Wenwen Wong, Chau-Wei Wu, Song Ou, Xueqi Zhao, Wanzhen Cai, Manbo Xie, Xiaoming |
author_facet | Xie, Jindong Zheng, Shaoquan Zou, Yutian Tang, Yuhui Tian, Wenwen Wong, Chau-Wei Wu, Song Ou, Xueqi Zhao, Wanzhen Cai, Manbo Xie, Xiaoming |
author_sort | Xie, Jindong |
collection | PubMed |
description | Growing evidence indicates a connection between cancer-associated fibroblasts (CAFs) and tumor microenvironment (TME) remodeling and tumor progression. Nevertheless, how patterns of CAFs impact TME and immunotherapy responsiveness in triple-negative breast cancer (TNBC) remains unclear. Here, we systematically investigate the relationship between TNBC progression and patterns of CAFs. By using unsupervised clustering methods in the Molecular Taxonomy of Breast Cancer International Consortium (METABRIC) dataset, we identified two distinct CAF-associated clusters that were related to clinical features, characteristics of TME, and prognosis of patients. Then, we established a CAF-related prognosis index (CPI) by the least absolute shrinkage and selection operator (LASSO)-Cox regression method. CPI showed prognostic accuracy in both training and validation cohorts (METABRIC, GSE96058, and GSE21653). Consequently, we constructed a nomogram with great predictive performance. Moreover, the CPI was verified to be correlated with the responsiveness of immunotherapy in three independent cohorts (GSE91061, GSE165252, and GSE173839). Taken together, the CPI might help us improve our recognition of the TME of TNBC, predict the prognosis of TNBC patients, and offer more immunotherapy strategies in the future. |
format | Online Article Text |
id | pubmed-9583405 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2022 |
publisher | Frontiers Media S.A. |
record_format | MEDLINE/PubMed |
spelling | pubmed-95834052022-10-21 Turning up a new pattern: Identification of cancer-associated fibroblast-related clusters in TNBC Xie, Jindong Zheng, Shaoquan Zou, Yutian Tang, Yuhui Tian, Wenwen Wong, Chau-Wei Wu, Song Ou, Xueqi Zhao, Wanzhen Cai, Manbo Xie, Xiaoming Front Immunol Immunology Growing evidence indicates a connection between cancer-associated fibroblasts (CAFs) and tumor microenvironment (TME) remodeling and tumor progression. Nevertheless, how patterns of CAFs impact TME and immunotherapy responsiveness in triple-negative breast cancer (TNBC) remains unclear. Here, we systematically investigate the relationship between TNBC progression and patterns of CAFs. By using unsupervised clustering methods in the Molecular Taxonomy of Breast Cancer International Consortium (METABRIC) dataset, we identified two distinct CAF-associated clusters that were related to clinical features, characteristics of TME, and prognosis of patients. Then, we established a CAF-related prognosis index (CPI) by the least absolute shrinkage and selection operator (LASSO)-Cox regression method. CPI showed prognostic accuracy in both training and validation cohorts (METABRIC, GSE96058, and GSE21653). Consequently, we constructed a nomogram with great predictive performance. Moreover, the CPI was verified to be correlated with the responsiveness of immunotherapy in three independent cohorts (GSE91061, GSE165252, and GSE173839). Taken together, the CPI might help us improve our recognition of the TME of TNBC, predict the prognosis of TNBC patients, and offer more immunotherapy strategies in the future. Frontiers Media S.A. 2022-10-06 /pmc/articles/PMC9583405/ /pubmed/36275659 http://dx.doi.org/10.3389/fimmu.2022.1022147 Text en Copyright © 2022 Xie, Zheng, Zou, Tang, Tian, Wong, Wu, Ou, Zhao, Cai and Xie https://creativecommons.org/licenses/by/4.0/This is an open-access article distributed under the terms of the Creative Commons Attribution License (CC BY). The use, distribution or reproduction in other forums is permitted, provided the original author(s) and the copyright owner(s) are credited and that the original publication in this journal is cited, in accordance with accepted academic practice. No use, distribution or reproduction is permitted which does not comply with these terms. |
spellingShingle | Immunology Xie, Jindong Zheng, Shaoquan Zou, Yutian Tang, Yuhui Tian, Wenwen Wong, Chau-Wei Wu, Song Ou, Xueqi Zhao, Wanzhen Cai, Manbo Xie, Xiaoming Turning up a new pattern: Identification of cancer-associated fibroblast-related clusters in TNBC |
title | Turning up a new pattern: Identification of cancer-associated fibroblast-related clusters in TNBC |
title_full | Turning up a new pattern: Identification of cancer-associated fibroblast-related clusters in TNBC |
title_fullStr | Turning up a new pattern: Identification of cancer-associated fibroblast-related clusters in TNBC |
title_full_unstemmed | Turning up a new pattern: Identification of cancer-associated fibroblast-related clusters in TNBC |
title_short | Turning up a new pattern: Identification of cancer-associated fibroblast-related clusters in TNBC |
title_sort | turning up a new pattern: identification of cancer-associated fibroblast-related clusters in tnbc |
topic | Immunology |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9583405/ https://www.ncbi.nlm.nih.gov/pubmed/36275659 http://dx.doi.org/10.3389/fimmu.2022.1022147 |
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