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Turning up a new pattern: Identification of cancer-associated fibroblast-related clusters in TNBC

Growing evidence indicates a connection between cancer-associated fibroblasts (CAFs) and tumor microenvironment (TME) remodeling and tumor progression. Nevertheless, how patterns of CAFs impact TME and immunotherapy responsiveness in triple-negative breast cancer (TNBC) remains unclear. Here, we sys...

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Autores principales: Xie, Jindong, Zheng, Shaoquan, Zou, Yutian, Tang, Yuhui, Tian, Wenwen, Wong, Chau-Wei, Wu, Song, Ou, Xueqi, Zhao, Wanzhen, Cai, Manbo, Xie, Xiaoming
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Frontiers Media S.A. 2022
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9583405/
https://www.ncbi.nlm.nih.gov/pubmed/36275659
http://dx.doi.org/10.3389/fimmu.2022.1022147
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author Xie, Jindong
Zheng, Shaoquan
Zou, Yutian
Tang, Yuhui
Tian, Wenwen
Wong, Chau-Wei
Wu, Song
Ou, Xueqi
Zhao, Wanzhen
Cai, Manbo
Xie, Xiaoming
author_facet Xie, Jindong
Zheng, Shaoquan
Zou, Yutian
Tang, Yuhui
Tian, Wenwen
Wong, Chau-Wei
Wu, Song
Ou, Xueqi
Zhao, Wanzhen
Cai, Manbo
Xie, Xiaoming
author_sort Xie, Jindong
collection PubMed
description Growing evidence indicates a connection between cancer-associated fibroblasts (CAFs) and tumor microenvironment (TME) remodeling and tumor progression. Nevertheless, how patterns of CAFs impact TME and immunotherapy responsiveness in triple-negative breast cancer (TNBC) remains unclear. Here, we systematically investigate the relationship between TNBC progression and patterns of CAFs. By using unsupervised clustering methods in the Molecular Taxonomy of Breast Cancer International Consortium (METABRIC) dataset, we identified two distinct CAF-associated clusters that were related to clinical features, characteristics of TME, and prognosis of patients. Then, we established a CAF-related prognosis index (CPI) by the least absolute shrinkage and selection operator (LASSO)-Cox regression method. CPI showed prognostic accuracy in both training and validation cohorts (METABRIC, GSE96058, and GSE21653). Consequently, we constructed a nomogram with great predictive performance. Moreover, the CPI was verified to be correlated with the responsiveness of immunotherapy in three independent cohorts (GSE91061, GSE165252, and GSE173839). Taken together, the CPI might help us improve our recognition of the TME of TNBC, predict the prognosis of TNBC patients, and offer more immunotherapy strategies in the future.
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spelling pubmed-95834052022-10-21 Turning up a new pattern: Identification of cancer-associated fibroblast-related clusters in TNBC Xie, Jindong Zheng, Shaoquan Zou, Yutian Tang, Yuhui Tian, Wenwen Wong, Chau-Wei Wu, Song Ou, Xueqi Zhao, Wanzhen Cai, Manbo Xie, Xiaoming Front Immunol Immunology Growing evidence indicates a connection between cancer-associated fibroblasts (CAFs) and tumor microenvironment (TME) remodeling and tumor progression. Nevertheless, how patterns of CAFs impact TME and immunotherapy responsiveness in triple-negative breast cancer (TNBC) remains unclear. Here, we systematically investigate the relationship between TNBC progression and patterns of CAFs. By using unsupervised clustering methods in the Molecular Taxonomy of Breast Cancer International Consortium (METABRIC) dataset, we identified two distinct CAF-associated clusters that were related to clinical features, characteristics of TME, and prognosis of patients. Then, we established a CAF-related prognosis index (CPI) by the least absolute shrinkage and selection operator (LASSO)-Cox regression method. CPI showed prognostic accuracy in both training and validation cohorts (METABRIC, GSE96058, and GSE21653). Consequently, we constructed a nomogram with great predictive performance. Moreover, the CPI was verified to be correlated with the responsiveness of immunotherapy in three independent cohorts (GSE91061, GSE165252, and GSE173839). Taken together, the CPI might help us improve our recognition of the TME of TNBC, predict the prognosis of TNBC patients, and offer more immunotherapy strategies in the future. Frontiers Media S.A. 2022-10-06 /pmc/articles/PMC9583405/ /pubmed/36275659 http://dx.doi.org/10.3389/fimmu.2022.1022147 Text en Copyright © 2022 Xie, Zheng, Zou, Tang, Tian, Wong, Wu, Ou, Zhao, Cai and Xie https://creativecommons.org/licenses/by/4.0/This is an open-access article distributed under the terms of the Creative Commons Attribution License (CC BY). The use, distribution or reproduction in other forums is permitted, provided the original author(s) and the copyright owner(s) are credited and that the original publication in this journal is cited, in accordance with accepted academic practice. No use, distribution or reproduction is permitted which does not comply with these terms.
spellingShingle Immunology
Xie, Jindong
Zheng, Shaoquan
Zou, Yutian
Tang, Yuhui
Tian, Wenwen
Wong, Chau-Wei
Wu, Song
Ou, Xueqi
Zhao, Wanzhen
Cai, Manbo
Xie, Xiaoming
Turning up a new pattern: Identification of cancer-associated fibroblast-related clusters in TNBC
title Turning up a new pattern: Identification of cancer-associated fibroblast-related clusters in TNBC
title_full Turning up a new pattern: Identification of cancer-associated fibroblast-related clusters in TNBC
title_fullStr Turning up a new pattern: Identification of cancer-associated fibroblast-related clusters in TNBC
title_full_unstemmed Turning up a new pattern: Identification of cancer-associated fibroblast-related clusters in TNBC
title_short Turning up a new pattern: Identification of cancer-associated fibroblast-related clusters in TNBC
title_sort turning up a new pattern: identification of cancer-associated fibroblast-related clusters in tnbc
topic Immunology
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9583405/
https://www.ncbi.nlm.nih.gov/pubmed/36275659
http://dx.doi.org/10.3389/fimmu.2022.1022147
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