Chromosome and Plasmid Sequences of Pantoea sp. Strain SOD02 Isolated from an Urban Freshwater Stream

After isolating Pantoea sp. strain SOD02 from an urban freshwater stream in Providence, RI, we used PacBio RSII data for de novo assembly and Illumina MiSeq data for polishing. This yielded complete circular sequences for a 4,227,027-bp chromosome with 54.7% GC and a 926,844-bp plasmid with 54.0% GC...

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Autores principales: Abaherah, Ibrahim, Almonte, Geraldine, Donohue, Kathryn, Furey, Daniel, Garvey, Kathleen, Joyal, Jacqueline, Luden, Devyn, Mulvey, Kathryn, O’Donnell, Sean, Pitre, Nina, Rexach, Aura, Sheehan, Kiley, Williams, Laura E.
Formato: Online Artículo Texto
Lenguaje:English
Publicado: American Society for Microbiology 2022
Materias:
Genome Sequences
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9583809/
https://www.ncbi.nlm.nih.gov/pubmed/36129292
http://dx.doi.org/10.1128/mra.00822-22
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author Abaherah, Ibrahim
Almonte, Geraldine
Donohue, Kathryn
Furey, Daniel
Garvey, Kathleen
Joyal, Jacqueline
Luden, Devyn
Mulvey, Kathryn
O’Donnell, Sean
Pitre, Nina
Rexach, Aura
Sheehan, Kiley
Williams, Laura E.
author_facet Abaherah, Ibrahim
Almonte, Geraldine
Donohue, Kathryn
Furey, Daniel
Garvey, Kathleen
Joyal, Jacqueline
Luden, Devyn
Mulvey, Kathryn
O’Donnell, Sean
Pitre, Nina
Rexach, Aura
Sheehan, Kiley
Williams, Laura E.
author_sort Abaherah, Ibrahim
collection PubMed
description After isolating Pantoea sp. strain SOD02 from an urban freshwater stream in Providence, RI, we used PacBio RSII data for de novo assembly and Illumina MiSeq data for polishing. This yielded complete circular sequences for a 4,227,027-bp chromosome with 54.7% GC and a 926,844-bp plasmid with 54.0% GC.
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spelling pubmed-95838092022-10-21 Chromosome and Plasmid Sequences of Pantoea sp. Strain SOD02 Isolated from an Urban Freshwater Stream Abaherah, Ibrahim Almonte, Geraldine Donohue, Kathryn Furey, Daniel Garvey, Kathleen Joyal, Jacqueline Luden, Devyn Mulvey, Kathryn O’Donnell, Sean Pitre, Nina Rexach, Aura Sheehan, Kiley Williams, Laura E. Microbiol Resour Announc Genome Sequences After isolating Pantoea sp. strain SOD02 from an urban freshwater stream in Providence, RI, we used PacBio RSII data for de novo assembly and Illumina MiSeq data for polishing. This yielded complete circular sequences for a 4,227,027-bp chromosome with 54.7% GC and a 926,844-bp plasmid with 54.0% GC. American Society for Microbiology 2022-09-21 /pmc/articles/PMC9583809/ /pubmed/36129292 http://dx.doi.org/10.1128/mra.00822-22 Text en Copyright © 2022 Abaherah et al. https://creativecommons.org/licenses/by/4.0/This is an open-access article distributed under the terms of the Creative Commons Attribution 4.0 International license (https://creativecommons.org/licenses/by/4.0/) .
spellingShingle Genome Sequences
Abaherah, Ibrahim
Almonte, Geraldine
Donohue, Kathryn
Furey, Daniel
Garvey, Kathleen
Joyal, Jacqueline
Luden, Devyn
Mulvey, Kathryn
O’Donnell, Sean
Pitre, Nina
Rexach, Aura
Sheehan, Kiley
Williams, Laura E.
Chromosome and Plasmid Sequences of Pantoea sp. Strain SOD02 Isolated from an Urban Freshwater Stream
title Chromosome and Plasmid Sequences of Pantoea sp. Strain SOD02 Isolated from an Urban Freshwater Stream
title_full Chromosome and Plasmid Sequences of Pantoea sp. Strain SOD02 Isolated from an Urban Freshwater Stream
title_fullStr Chromosome and Plasmid Sequences of Pantoea sp. Strain SOD02 Isolated from an Urban Freshwater Stream
title_full_unstemmed Chromosome and Plasmid Sequences of Pantoea sp. Strain SOD02 Isolated from an Urban Freshwater Stream
title_short Chromosome and Plasmid Sequences of Pantoea sp. Strain SOD02 Isolated from an Urban Freshwater Stream
title_sort chromosome and plasmid sequences of pantoea sp. strain sod02 isolated from an urban freshwater stream
topic Genome Sequences
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9583809/
https://www.ncbi.nlm.nih.gov/pubmed/36129292
http://dx.doi.org/10.1128/mra.00822-22
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