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Highly-automated, high-throughput replication of yeast-based logic circuit design assessments

We describe an experimental campaign that replicated the performance assessment of logic gates engineered into cells of Saccharomyces cerevisiae by Gander et al. Our experimental campaign used a novel high-throughput experimentation framework developed under Defense Advanced Research Projects Agency...

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Detalles Bibliográficos
Autores principales: Goldman, Robert P, Moseley, Robert, Roehner, Nicholas, Cummins, Breschine, Vrana, Justin D, Clowers, Katie J, Bryce, Daniel, Beal, Jacob, DeHaven, Matthew, Nowak, Joshua, Higa, Trissha, Biggers, Vanessa, Lee, Peter, Hunt, Jeremy P, Mosqueda, Lorraine, Haase, Steven B, Weston, Mark, Zheng, George, Deckard, Anastasia, Gopaulakrishnan, Shweta, Stubbs, Joseph F, Gaffney, Niall I, Vaughn, Matthew W, Maheshri, Narendra, Mikhalev, Ekaterina, Bartley, Bryan, Markeloff, Richard, Mitchell, Tom, Nguyen, Tramy, Sumorok, Daniel, Walczak, Nicholas, Myers, Chris, Zundel, Zach, Hatch, Benjamin, Scholz, James, Colonna-Romano, John
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Oxford University Press 2022
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9583850/
https://www.ncbi.nlm.nih.gov/pubmed/36285185
http://dx.doi.org/10.1093/synbio/ysac018
Descripción
Sumario:We describe an experimental campaign that replicated the performance assessment of logic gates engineered into cells of Saccharomyces cerevisiae by Gander et al. Our experimental campaign used a novel high-throughput experimentation framework developed under Defense Advanced Research Projects Agency’s Synergistic Discovery and Design program: a remote robotic lab at Strateos executed a parameterized experimental protocol. Using this protocol and robotic execution, we generated two orders of magnitude more flow cytometry data than the original experiments. We discuss our results, which largely, but not completely, agree with the original report and make some remarks about lessons learned. Graphical Abstract [Image: see text]