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Chaos in synthetic microbial communities
Predictability is a fundamental requirement in biological engineering. As we move to building coordinated multicellular systems, the potential for such systems to display chaotic behaviour becomes a concern. Therefore understanding which systems show chaos is an important design consideration. We de...
Autores principales: | , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Public Library of Science
2022
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9584520/ https://www.ncbi.nlm.nih.gov/pubmed/36215322 http://dx.doi.org/10.1371/journal.pcbi.1010548 |
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author | Karkaria, Behzad D. Manhart, Angelika Fedorec, Alex J. H. Barnes, Chris P. |
author_facet | Karkaria, Behzad D. Manhart, Angelika Fedorec, Alex J. H. Barnes, Chris P. |
author_sort | Karkaria, Behzad D. |
collection | PubMed |
description | Predictability is a fundamental requirement in biological engineering. As we move to building coordinated multicellular systems, the potential for such systems to display chaotic behaviour becomes a concern. Therefore understanding which systems show chaos is an important design consideration. We developed a methodology to explore the potential for chaotic dynamics in small microbial communities governed by resource competition, intercellular communication and competitive bacteriocin interactions. Our model selection pipeline uses Approximate Bayesian Computation to first identify oscillatory behaviours as a route to finding chaotic behaviour. We have shown that we can expect to find chaotic states in relatively small synthetic microbial systems, understand the governing dynamics and provide insights into how to control such systems. This work is the first to query the existence of chaotic behaviour in synthetic microbial communities and has important ramifications for the fields of biotechnology, bioprocessing and synthetic biology. |
format | Online Article Text |
id | pubmed-9584520 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2022 |
publisher | Public Library of Science |
record_format | MEDLINE/PubMed |
spelling | pubmed-95845202022-10-21 Chaos in synthetic microbial communities Karkaria, Behzad D. Manhart, Angelika Fedorec, Alex J. H. Barnes, Chris P. PLoS Comput Biol Research Article Predictability is a fundamental requirement in biological engineering. As we move to building coordinated multicellular systems, the potential for such systems to display chaotic behaviour becomes a concern. Therefore understanding which systems show chaos is an important design consideration. We developed a methodology to explore the potential for chaotic dynamics in small microbial communities governed by resource competition, intercellular communication and competitive bacteriocin interactions. Our model selection pipeline uses Approximate Bayesian Computation to first identify oscillatory behaviours as a route to finding chaotic behaviour. We have shown that we can expect to find chaotic states in relatively small synthetic microbial systems, understand the governing dynamics and provide insights into how to control such systems. This work is the first to query the existence of chaotic behaviour in synthetic microbial communities and has important ramifications for the fields of biotechnology, bioprocessing and synthetic biology. Public Library of Science 2022-10-10 /pmc/articles/PMC9584520/ /pubmed/36215322 http://dx.doi.org/10.1371/journal.pcbi.1010548 Text en © 2022 Karkaria et al https://creativecommons.org/licenses/by/4.0/This is an open access article distributed under the terms of the Creative Commons Attribution License (https://creativecommons.org/licenses/by/4.0/) , which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited. |
spellingShingle | Research Article Karkaria, Behzad D. Manhart, Angelika Fedorec, Alex J. H. Barnes, Chris P. Chaos in synthetic microbial communities |
title | Chaos in synthetic microbial communities |
title_full | Chaos in synthetic microbial communities |
title_fullStr | Chaos in synthetic microbial communities |
title_full_unstemmed | Chaos in synthetic microbial communities |
title_short | Chaos in synthetic microbial communities |
title_sort | chaos in synthetic microbial communities |
topic | Research Article |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9584520/ https://www.ncbi.nlm.nih.gov/pubmed/36215322 http://dx.doi.org/10.1371/journal.pcbi.1010548 |
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