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Trainable joint bilateral filters for enhanced prediction stability in low-dose CT

Low-dose computed tomography (CT) denoising algorithms aim to enable reduced patient dose in routine CT acquisitions while maintaining high image quality. Recently, deep learning (DL)-based methods were introduced, outperforming conventional denoising algorithms on this task due to their high model...

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Autores principales: Wagner, Fabian, Thies, Mareike, Denzinger, Felix, Gu, Mingxuan, Patwari, Mayank, Ploner, Stefan, Maul, Noah, Pfaff, Laura, Huang, Yixing, Maier, Andreas
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Nature Publishing Group UK 2022
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9585057/
https://www.ncbi.nlm.nih.gov/pubmed/36266416
http://dx.doi.org/10.1038/s41598-022-22530-4
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author Wagner, Fabian
Thies, Mareike
Denzinger, Felix
Gu, Mingxuan
Patwari, Mayank
Ploner, Stefan
Maul, Noah
Pfaff, Laura
Huang, Yixing
Maier, Andreas
author_facet Wagner, Fabian
Thies, Mareike
Denzinger, Felix
Gu, Mingxuan
Patwari, Mayank
Ploner, Stefan
Maul, Noah
Pfaff, Laura
Huang, Yixing
Maier, Andreas
author_sort Wagner, Fabian
collection PubMed
description Low-dose computed tomography (CT) denoising algorithms aim to enable reduced patient dose in routine CT acquisitions while maintaining high image quality. Recently, deep learning (DL)-based methods were introduced, outperforming conventional denoising algorithms on this task due to their high model capacity. However, for the transition of DL-based denoising to clinical practice, these data-driven approaches must generalize robustly beyond the seen training data. We, therefore, propose a hybrid denoising approach consisting of a set of trainable joint bilateral filters (JBFs) combined with a convolutional DL-based denoising network to predict the guidance image. Our proposed denoising pipeline combines the high model capacity enabled by DL-based feature extraction with the reliability of the conventional JBF. The pipeline’s ability to generalize is demonstrated by training on abdomen CT scans without metal implants and testing on abdomen scans with metal implants as well as on head CT data. When embedding RED-CNN/QAE, two well-established DL-based denoisers in our pipeline, the denoising performance is improved by 10%/82% (RMSE) and 3%/81% (PSNR) in regions containing metal and by 6%/78% (RMSE) and 2%/4% (PSNR) on head CT data, compared to the respective vanilla model. Concluding, the proposed trainable JBFs limit the error bound of deep neural networks to facilitate the applicability of DL-based denoisers in low-dose CT pipelines.
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spelling pubmed-95850572022-10-22 Trainable joint bilateral filters for enhanced prediction stability in low-dose CT Wagner, Fabian Thies, Mareike Denzinger, Felix Gu, Mingxuan Patwari, Mayank Ploner, Stefan Maul, Noah Pfaff, Laura Huang, Yixing Maier, Andreas Sci Rep Article Low-dose computed tomography (CT) denoising algorithms aim to enable reduced patient dose in routine CT acquisitions while maintaining high image quality. Recently, deep learning (DL)-based methods were introduced, outperforming conventional denoising algorithms on this task due to their high model capacity. However, for the transition of DL-based denoising to clinical practice, these data-driven approaches must generalize robustly beyond the seen training data. We, therefore, propose a hybrid denoising approach consisting of a set of trainable joint bilateral filters (JBFs) combined with a convolutional DL-based denoising network to predict the guidance image. Our proposed denoising pipeline combines the high model capacity enabled by DL-based feature extraction with the reliability of the conventional JBF. The pipeline’s ability to generalize is demonstrated by training on abdomen CT scans without metal implants and testing on abdomen scans with metal implants as well as on head CT data. When embedding RED-CNN/QAE, two well-established DL-based denoisers in our pipeline, the denoising performance is improved by 10%/82% (RMSE) and 3%/81% (PSNR) in regions containing metal and by 6%/78% (RMSE) and 2%/4% (PSNR) on head CT data, compared to the respective vanilla model. Concluding, the proposed trainable JBFs limit the error bound of deep neural networks to facilitate the applicability of DL-based denoisers in low-dose CT pipelines. Nature Publishing Group UK 2022-10-20 /pmc/articles/PMC9585057/ /pubmed/36266416 http://dx.doi.org/10.1038/s41598-022-22530-4 Text en © The Author(s) 2022 https://creativecommons.org/licenses/by/4.0/Open AccessThis article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons licence, and indicate if changes were made. The images or other third party material in this article are included in the article's Creative Commons licence, unless indicated otherwise in a credit line to the material. If material is not included in the article's Creative Commons licence and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this licence, visit http://creativecommons.org/licenses/by/4.0/ (https://creativecommons.org/licenses/by/4.0/) .
spellingShingle Article
Wagner, Fabian
Thies, Mareike
Denzinger, Felix
Gu, Mingxuan
Patwari, Mayank
Ploner, Stefan
Maul, Noah
Pfaff, Laura
Huang, Yixing
Maier, Andreas
Trainable joint bilateral filters for enhanced prediction stability in low-dose CT
title Trainable joint bilateral filters for enhanced prediction stability in low-dose CT
title_full Trainable joint bilateral filters for enhanced prediction stability in low-dose CT
title_fullStr Trainable joint bilateral filters for enhanced prediction stability in low-dose CT
title_full_unstemmed Trainable joint bilateral filters for enhanced prediction stability in low-dose CT
title_short Trainable joint bilateral filters for enhanced prediction stability in low-dose CT
title_sort trainable joint bilateral filters for enhanced prediction stability in low-dose ct
topic Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9585057/
https://www.ncbi.nlm.nih.gov/pubmed/36266416
http://dx.doi.org/10.1038/s41598-022-22530-4
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