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Contribution of CRISPRable DNA to human complex traits

CRISPR-Cas is a powerful genome editing tool for various species and human cell lines, widely used in many research areas including studying the mechanisms, targets, and gene therapies of human diseases. Recent developments have even allowed high-throughput genetic screening using the CRISPR system....

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Autores principales: Zhai, Ranran, Zheng, Chenqing, Yang, Zhijian, Li, Ting, Chen, Jiantao, Shen, Xia
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Nature Publishing Group UK 2022
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9585070/
https://www.ncbi.nlm.nih.gov/pubmed/36266475
http://dx.doi.org/10.1038/s42003-022-03969-7
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author Zhai, Ranran
Zheng, Chenqing
Yang, Zhijian
Li, Ting
Chen, Jiantao
Shen, Xia
author_facet Zhai, Ranran
Zheng, Chenqing
Yang, Zhijian
Li, Ting
Chen, Jiantao
Shen, Xia
author_sort Zhai, Ranran
collection PubMed
description CRISPR-Cas is a powerful genome editing tool for various species and human cell lines, widely used in many research areas including studying the mechanisms, targets, and gene therapies of human diseases. Recent developments have even allowed high-throughput genetic screening using the CRISPR system. However, due to the practical and ethical limitations in human gene editing research, little is known about whether CRISPR-editable DNA segments could influence human complex traits or diseases. Here, we investigated the human genomic regions condensed with different CRISPR Cas enzymes’ protospacer-adjacent motifs (PAMs). We found that Cas enzymes with GC-rich PAMs could interfere more with the genomic regions that harbor enriched heritability for human complex traits and diseases. The results linked GC content across the genome to the functional genomic elements in the heritability enrichment of human complex traits. We provide a genetic overview of the effects of high-throughput genome editing on human complex traits.
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spelling pubmed-95850702022-10-22 Contribution of CRISPRable DNA to human complex traits Zhai, Ranran Zheng, Chenqing Yang, Zhijian Li, Ting Chen, Jiantao Shen, Xia Commun Biol Article CRISPR-Cas is a powerful genome editing tool for various species and human cell lines, widely used in many research areas including studying the mechanisms, targets, and gene therapies of human diseases. Recent developments have even allowed high-throughput genetic screening using the CRISPR system. However, due to the practical and ethical limitations in human gene editing research, little is known about whether CRISPR-editable DNA segments could influence human complex traits or diseases. Here, we investigated the human genomic regions condensed with different CRISPR Cas enzymes’ protospacer-adjacent motifs (PAMs). We found that Cas enzymes with GC-rich PAMs could interfere more with the genomic regions that harbor enriched heritability for human complex traits and diseases. The results linked GC content across the genome to the functional genomic elements in the heritability enrichment of human complex traits. We provide a genetic overview of the effects of high-throughput genome editing on human complex traits. Nature Publishing Group UK 2022-10-20 /pmc/articles/PMC9585070/ /pubmed/36266475 http://dx.doi.org/10.1038/s42003-022-03969-7 Text en © The Author(s) 2022 https://creativecommons.org/licenses/by/4.0/Open Access This article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons license, and indicate if changes were made. The images or other third party material in this article are included in the article’s Creative Commons license, unless indicated otherwise in a credit line to the material. If material is not included in the article’s Creative Commons license and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this license, visit http://creativecommons.org/licenses/by/4.0/ (https://creativecommons.org/licenses/by/4.0/) .
spellingShingle Article
Zhai, Ranran
Zheng, Chenqing
Yang, Zhijian
Li, Ting
Chen, Jiantao
Shen, Xia
Contribution of CRISPRable DNA to human complex traits
title Contribution of CRISPRable DNA to human complex traits
title_full Contribution of CRISPRable DNA to human complex traits
title_fullStr Contribution of CRISPRable DNA to human complex traits
title_full_unstemmed Contribution of CRISPRable DNA to human complex traits
title_short Contribution of CRISPRable DNA to human complex traits
title_sort contribution of crisprable dna to human complex traits
topic Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9585070/
https://www.ncbi.nlm.nih.gov/pubmed/36266475
http://dx.doi.org/10.1038/s42003-022-03969-7
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