Cargando…
N-Net: Lesion region segmentations using the generalized hybrid dilated convolutions for polyps in colonoscopy images
Colorectal cancer is the cancer with the second highest and the third highest incidence rates for the female and the male, respectively. Colorectal polyps are potential prognostic indicators of colorectal cancer, and colonoscopy is the gold standard for the biopsy and the removal of colorectal polyp...
Autores principales: | , , , |
---|---|
Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Frontiers Media S.A.
2022
|
Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9585937/ https://www.ncbi.nlm.nih.gov/pubmed/36277395 http://dx.doi.org/10.3389/fbioe.2022.963590 |
_version_ | 1784813599891390464 |
---|---|
author | Cui, Rongsheng Yang, Runzhuo Liu, Feng Cai, Chunqian |
author_facet | Cui, Rongsheng Yang, Runzhuo Liu, Feng Cai, Chunqian |
author_sort | Cui, Rongsheng |
collection | PubMed |
description | Colorectal cancer is the cancer with the second highest and the third highest incidence rates for the female and the male, respectively. Colorectal polyps are potential prognostic indicators of colorectal cancer, and colonoscopy is the gold standard for the biopsy and the removal of colorectal polyps. In this scenario, one of the main concerns is to ensure the accuracy of lesion region identifications. However, the missing rate of polyps through manual observations in colonoscopy can reach 14%–30%. In this paper, we focus on the identifications of polyps in clinical colonoscopy images and propose a new N-shaped deep neural network (N-Net) structure to conduct the lesion region segmentations. The encoder-decoder framework is adopted in the N-Net structure and the DenseNet modules are implemented in the encoding path of the network. Moreover, we innovatively propose the strategy to design the generalized hybrid dilated convolution (GHDC), which enables flexible dilated rates and convolutional kernel sizes, to facilitate the transmission of the multi-scale information with the respective fields expanded. Based on the strategy of GHDC designing, we design four GHDC blocks to connect the encoding and the decoding paths. Through the experiments on two publicly available datasets on polyp segmentations of colonoscopy images: the Kvasir-SEG dataset and the CVC-ClinicDB dataset, the rationality and superiority of the proposed GHDC blocks and the proposed N-Net are verified. Through the comparative studies with the state-of-the-art methods, such as TransU-Net, DeepLabV3+ and CA-Net, we show that even with a small amount of network parameters, the N-Net outperforms with the Dice of 94.45%, the average symmetric surface distance (ASSD) of 0.38 pix and the mean intersection-over-union (mIoU) of 89.80% on the Kvasir-SEG dataset, and with the Dice of 97.03%, the ASSD of 0.16 pix and the mIoU of 94.35% on the CVC-ClinicDB dataset. |
format | Online Article Text |
id | pubmed-9585937 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2022 |
publisher | Frontiers Media S.A. |
record_format | MEDLINE/PubMed |
spelling | pubmed-95859372022-10-22 N-Net: Lesion region segmentations using the generalized hybrid dilated convolutions for polyps in colonoscopy images Cui, Rongsheng Yang, Runzhuo Liu, Feng Cai, Chunqian Front Bioeng Biotechnol Bioengineering and Biotechnology Colorectal cancer is the cancer with the second highest and the third highest incidence rates for the female and the male, respectively. Colorectal polyps are potential prognostic indicators of colorectal cancer, and colonoscopy is the gold standard for the biopsy and the removal of colorectal polyps. In this scenario, one of the main concerns is to ensure the accuracy of lesion region identifications. However, the missing rate of polyps through manual observations in colonoscopy can reach 14%–30%. In this paper, we focus on the identifications of polyps in clinical colonoscopy images and propose a new N-shaped deep neural network (N-Net) structure to conduct the lesion region segmentations. The encoder-decoder framework is adopted in the N-Net structure and the DenseNet modules are implemented in the encoding path of the network. Moreover, we innovatively propose the strategy to design the generalized hybrid dilated convolution (GHDC), which enables flexible dilated rates and convolutional kernel sizes, to facilitate the transmission of the multi-scale information with the respective fields expanded. Based on the strategy of GHDC designing, we design four GHDC blocks to connect the encoding and the decoding paths. Through the experiments on two publicly available datasets on polyp segmentations of colonoscopy images: the Kvasir-SEG dataset and the CVC-ClinicDB dataset, the rationality and superiority of the proposed GHDC blocks and the proposed N-Net are verified. Through the comparative studies with the state-of-the-art methods, such as TransU-Net, DeepLabV3+ and CA-Net, we show that even with a small amount of network parameters, the N-Net outperforms with the Dice of 94.45%, the average symmetric surface distance (ASSD) of 0.38 pix and the mean intersection-over-union (mIoU) of 89.80% on the Kvasir-SEG dataset, and with the Dice of 97.03%, the ASSD of 0.16 pix and the mIoU of 94.35% on the CVC-ClinicDB dataset. Frontiers Media S.A. 2022-10-07 /pmc/articles/PMC9585937/ /pubmed/36277395 http://dx.doi.org/10.3389/fbioe.2022.963590 Text en Copyright © 2022 Cui, Yang, Liu and Cai. https://creativecommons.org/licenses/by/4.0/This is an open-access article distributed under the terms of the Creative Commons Attribution License (CC BY). The use, distribution or reproduction in other forums is permitted, provided the original author(s) and the copyright owner(s) are credited and that the original publication in this journal is cited, in accordance with accepted academic practice. No use, distribution or reproduction is permitted which does not comply with these terms. |
spellingShingle | Bioengineering and Biotechnology Cui, Rongsheng Yang, Runzhuo Liu, Feng Cai, Chunqian N-Net: Lesion region segmentations using the generalized hybrid dilated convolutions for polyps in colonoscopy images |
title | N-Net: Lesion region segmentations using the generalized hybrid dilated convolutions for polyps in colonoscopy images |
title_full | N-Net: Lesion region segmentations using the generalized hybrid dilated convolutions for polyps in colonoscopy images |
title_fullStr | N-Net: Lesion region segmentations using the generalized hybrid dilated convolutions for polyps in colonoscopy images |
title_full_unstemmed | N-Net: Lesion region segmentations using the generalized hybrid dilated convolutions for polyps in colonoscopy images |
title_short | N-Net: Lesion region segmentations using the generalized hybrid dilated convolutions for polyps in colonoscopy images |
title_sort | n-net: lesion region segmentations using the generalized hybrid dilated convolutions for polyps in colonoscopy images |
topic | Bioengineering and Biotechnology |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9585937/ https://www.ncbi.nlm.nih.gov/pubmed/36277395 http://dx.doi.org/10.3389/fbioe.2022.963590 |
work_keys_str_mv | AT cuirongsheng nnetlesionregionsegmentationsusingthegeneralizedhybriddilatedconvolutionsforpolypsincolonoscopyimages AT yangrunzhuo nnetlesionregionsegmentationsusingthegeneralizedhybriddilatedconvolutionsforpolypsincolonoscopyimages AT liufeng nnetlesionregionsegmentationsusingthegeneralizedhybriddilatedconvolutionsforpolypsincolonoscopyimages AT caichunqian nnetlesionregionsegmentationsusingthegeneralizedhybriddilatedconvolutionsforpolypsincolonoscopyimages |