Cargando…

Limited clinical utility for GWAS or polygenic risk score for postoperative acute kidney injury in non-cardiac surgery in European-ancestry patients

BACKGROUND: Prior studies support a genetic basis for postoperative acute kidney injury (AKI). We conducted a genome-wide association study (GWAS), assessed the clinical utility of a polygenic risk score (PRS), and estimated the heritable component of AKI in patients who underwent noncardiac surgery...

Descripción completa

Detalles Bibliográficos
Autores principales: Larach, Daniel B., Lewis, Adam, Bastarache, Lisa, Pandit, Anita, He, Jing, Sinha, Anik, Douville, Nicholas J., Heung, Michael, Mathis, Michael R., Mosley, Jonathan D., Wanderer, Jonathan P., Kheterpal, Sachin, Zawistowski, Matthew, Brummett, Chad M., Siew, Edward D., Robinson-Cohen, Cassianne, Kertai, Miklos D.
Formato: Online Artículo Texto
Lenguaje:English
Publicado: BioMed Central 2022
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9587619/
https://www.ncbi.nlm.nih.gov/pubmed/36271344
http://dx.doi.org/10.1186/s12882-022-02964-8
_version_ 1784813945982287872
author Larach, Daniel B.
Lewis, Adam
Bastarache, Lisa
Pandit, Anita
He, Jing
Sinha, Anik
Douville, Nicholas J.
Heung, Michael
Mathis, Michael R.
Mosley, Jonathan D.
Wanderer, Jonathan P.
Kheterpal, Sachin
Zawistowski, Matthew
Brummett, Chad M.
Siew, Edward D.
Robinson-Cohen, Cassianne
Kertai, Miklos D.
author_facet Larach, Daniel B.
Lewis, Adam
Bastarache, Lisa
Pandit, Anita
He, Jing
Sinha, Anik
Douville, Nicholas J.
Heung, Michael
Mathis, Michael R.
Mosley, Jonathan D.
Wanderer, Jonathan P.
Kheterpal, Sachin
Zawistowski, Matthew
Brummett, Chad M.
Siew, Edward D.
Robinson-Cohen, Cassianne
Kertai, Miklos D.
author_sort Larach, Daniel B.
collection PubMed
description BACKGROUND: Prior studies support a genetic basis for postoperative acute kidney injury (AKI). We conducted a genome-wide association study (GWAS), assessed the clinical utility of a polygenic risk score (PRS), and estimated the heritable component of AKI in patients who underwent noncardiac surgery. METHODS: We performed a retrospective large-scale genome-wide association study followed by a meta-analysis of patients who underwent noncardiac surgery at the Vanderbilt University Medical Center (“Vanderbilt” cohort) or Michigan Medicine, the academic medical center of the University of Michigan (“Michigan” cohort). In the Vanderbilt cohort, the relationship between polygenic risk score for estimated glomerular filtration rate and postoperative AKI was also tested to explore the predictive power of aggregating multiple common genetic variants associated with AKI risk. Similarly, in the Vanderbilt cohort genome-wide complex trait analysis was used to estimate the heritable component of AKI due to common genetic variants. RESULTS: The study population included 8248 adults in the Vanderbilt cohort (mean [SD] 58.05 [15.23] years, 50.2% men) and 5998 adults in Michigan cohort (56.24 [14.76] years, 49% men). Incident postoperative AKI events occurred in 959 patients (11.6%) and in 277 patients (4.6%), respectively. No loci met genome-wide significance in the GWAS and meta-analysis. PRS for estimated glomerular filtration rate explained a very small percentage of variance in rates of postoperative AKI and was not significantly associated with AKI (odds ratio 1.050 per 1 SD increase in polygenic risk score [95% CI, 0.971–1.134]). The estimated heritability among common variants for AKI was 4.5% (SE = 4.5%) suggesting low heritability. CONCLUSION: The findings of this study indicate that common genetic variation minimally contributes to postoperative AKI after noncardiac surgery, and likely has little clinical utility for identifying high-risk patients. SUPPLEMENTARY INFORMATION: The online version contains supplementary material available at 10.1186/s12882-022-02964-8.
format Online
Article
Text
id pubmed-9587619
institution National Center for Biotechnology Information
language English
publishDate 2022
publisher BioMed Central
record_format MEDLINE/PubMed
spelling pubmed-95876192022-10-23 Limited clinical utility for GWAS or polygenic risk score for postoperative acute kidney injury in non-cardiac surgery in European-ancestry patients Larach, Daniel B. Lewis, Adam Bastarache, Lisa Pandit, Anita He, Jing Sinha, Anik Douville, Nicholas J. Heung, Michael Mathis, Michael R. Mosley, Jonathan D. Wanderer, Jonathan P. Kheterpal, Sachin Zawistowski, Matthew Brummett, Chad M. Siew, Edward D. Robinson-Cohen, Cassianne Kertai, Miklos D. BMC Nephrol Research BACKGROUND: Prior studies support a genetic basis for postoperative acute kidney injury (AKI). We conducted a genome-wide association study (GWAS), assessed the clinical utility of a polygenic risk score (PRS), and estimated the heritable component of AKI in patients who underwent noncardiac surgery. METHODS: We performed a retrospective large-scale genome-wide association study followed by a meta-analysis of patients who underwent noncardiac surgery at the Vanderbilt University Medical Center (“Vanderbilt” cohort) or Michigan Medicine, the academic medical center of the University of Michigan (“Michigan” cohort). In the Vanderbilt cohort, the relationship between polygenic risk score for estimated glomerular filtration rate and postoperative AKI was also tested to explore the predictive power of aggregating multiple common genetic variants associated with AKI risk. Similarly, in the Vanderbilt cohort genome-wide complex trait analysis was used to estimate the heritable component of AKI due to common genetic variants. RESULTS: The study population included 8248 adults in the Vanderbilt cohort (mean [SD] 58.05 [15.23] years, 50.2% men) and 5998 adults in Michigan cohort (56.24 [14.76] years, 49% men). Incident postoperative AKI events occurred in 959 patients (11.6%) and in 277 patients (4.6%), respectively. No loci met genome-wide significance in the GWAS and meta-analysis. PRS for estimated glomerular filtration rate explained a very small percentage of variance in rates of postoperative AKI and was not significantly associated with AKI (odds ratio 1.050 per 1 SD increase in polygenic risk score [95% CI, 0.971–1.134]). The estimated heritability among common variants for AKI was 4.5% (SE = 4.5%) suggesting low heritability. CONCLUSION: The findings of this study indicate that common genetic variation minimally contributes to postoperative AKI after noncardiac surgery, and likely has little clinical utility for identifying high-risk patients. SUPPLEMENTARY INFORMATION: The online version contains supplementary material available at 10.1186/s12882-022-02964-8. BioMed Central 2022-10-21 /pmc/articles/PMC9587619/ /pubmed/36271344 http://dx.doi.org/10.1186/s12882-022-02964-8 Text en © The Author(s) 2022 https://creativecommons.org/licenses/by/4.0/Open AccessThis article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons licence, and indicate if changes were made. The images or other third party material in this article are included in the article's Creative Commons licence, unless indicated otherwise in a credit line to the material. If material is not included in the article's Creative Commons licence and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this licence, visit http://creativecommons.org/licenses/by/4.0/ (https://creativecommons.org/licenses/by/4.0/) . The Creative Commons Public Domain Dedication waiver (http://creativecommons.org/publicdomain/zero/1.0/ (https://creativecommons.org/publicdomain/zero/1.0/) ) applies to the data made available in this article, unless otherwise stated in a credit line to the data.
spellingShingle Research
Larach, Daniel B.
Lewis, Adam
Bastarache, Lisa
Pandit, Anita
He, Jing
Sinha, Anik
Douville, Nicholas J.
Heung, Michael
Mathis, Michael R.
Mosley, Jonathan D.
Wanderer, Jonathan P.
Kheterpal, Sachin
Zawistowski, Matthew
Brummett, Chad M.
Siew, Edward D.
Robinson-Cohen, Cassianne
Kertai, Miklos D.
Limited clinical utility for GWAS or polygenic risk score for postoperative acute kidney injury in non-cardiac surgery in European-ancestry patients
title Limited clinical utility for GWAS or polygenic risk score for postoperative acute kidney injury in non-cardiac surgery in European-ancestry patients
title_full Limited clinical utility for GWAS or polygenic risk score for postoperative acute kidney injury in non-cardiac surgery in European-ancestry patients
title_fullStr Limited clinical utility for GWAS or polygenic risk score for postoperative acute kidney injury in non-cardiac surgery in European-ancestry patients
title_full_unstemmed Limited clinical utility for GWAS or polygenic risk score for postoperative acute kidney injury in non-cardiac surgery in European-ancestry patients
title_short Limited clinical utility for GWAS or polygenic risk score for postoperative acute kidney injury in non-cardiac surgery in European-ancestry patients
title_sort limited clinical utility for gwas or polygenic risk score for postoperative acute kidney injury in non-cardiac surgery in european-ancestry patients
topic Research
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9587619/
https://www.ncbi.nlm.nih.gov/pubmed/36271344
http://dx.doi.org/10.1186/s12882-022-02964-8
work_keys_str_mv AT larachdanielb limitedclinicalutilityforgwasorpolygenicriskscoreforpostoperativeacutekidneyinjuryinnoncardiacsurgeryineuropeanancestrypatients
AT lewisadam limitedclinicalutilityforgwasorpolygenicriskscoreforpostoperativeacutekidneyinjuryinnoncardiacsurgeryineuropeanancestrypatients
AT bastarachelisa limitedclinicalutilityforgwasorpolygenicriskscoreforpostoperativeacutekidneyinjuryinnoncardiacsurgeryineuropeanancestrypatients
AT panditanita limitedclinicalutilityforgwasorpolygenicriskscoreforpostoperativeacutekidneyinjuryinnoncardiacsurgeryineuropeanancestrypatients
AT hejing limitedclinicalutilityforgwasorpolygenicriskscoreforpostoperativeacutekidneyinjuryinnoncardiacsurgeryineuropeanancestrypatients
AT sinhaanik limitedclinicalutilityforgwasorpolygenicriskscoreforpostoperativeacutekidneyinjuryinnoncardiacsurgeryineuropeanancestrypatients
AT douvillenicholasj limitedclinicalutilityforgwasorpolygenicriskscoreforpostoperativeacutekidneyinjuryinnoncardiacsurgeryineuropeanancestrypatients
AT heungmichael limitedclinicalutilityforgwasorpolygenicriskscoreforpostoperativeacutekidneyinjuryinnoncardiacsurgeryineuropeanancestrypatients
AT mathismichaelr limitedclinicalutilityforgwasorpolygenicriskscoreforpostoperativeacutekidneyinjuryinnoncardiacsurgeryineuropeanancestrypatients
AT mosleyjonathand limitedclinicalutilityforgwasorpolygenicriskscoreforpostoperativeacutekidneyinjuryinnoncardiacsurgeryineuropeanancestrypatients
AT wandererjonathanp limitedclinicalutilityforgwasorpolygenicriskscoreforpostoperativeacutekidneyinjuryinnoncardiacsurgeryineuropeanancestrypatients
AT kheterpalsachin limitedclinicalutilityforgwasorpolygenicriskscoreforpostoperativeacutekidneyinjuryinnoncardiacsurgeryineuropeanancestrypatients
AT zawistowskimatthew limitedclinicalutilityforgwasorpolygenicriskscoreforpostoperativeacutekidneyinjuryinnoncardiacsurgeryineuropeanancestrypatients
AT brummettchadm limitedclinicalutilityforgwasorpolygenicriskscoreforpostoperativeacutekidneyinjuryinnoncardiacsurgeryineuropeanancestrypatients
AT siewedwardd limitedclinicalutilityforgwasorpolygenicriskscoreforpostoperativeacutekidneyinjuryinnoncardiacsurgeryineuropeanancestrypatients
AT robinsoncohencassianne limitedclinicalutilityforgwasorpolygenicriskscoreforpostoperativeacutekidneyinjuryinnoncardiacsurgeryineuropeanancestrypatients
AT kertaimiklosd limitedclinicalutilityforgwasorpolygenicriskscoreforpostoperativeacutekidneyinjuryinnoncardiacsurgeryineuropeanancestrypatients