Cargando…

Impacts of additive, dominance, and inbreeding depression effects on genomic evaluation by combining two SNP chips in Canadian Yorkshire pigs bred in China

BACKGROUND: At the beginning of genomic selection, some Chinese companies genotyped pigs with different single nucleotide polymorphism (SNP) arrays. The obtained genomic data are then combined and to do this, several imputation strategies have been developed. Usually, only additive genetic effects a...

Descripción completa

Detalles Bibliográficos
Autores principales:	Mei, Quanshun, Vitezica, Zulma G., Li, Jielin, Zhao, Shuhong, Legarra, Andres, Xiang, Tao
Formato:	Online Artículo Texto
Lenguaje:	English
Publicado:	BioMed Central 2022
Materias:	Research Article
Acceso en línea:	https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9588241/ https://www.ncbi.nlm.nih.gov/pubmed/36273127 http://dx.doi.org/10.1186/s12711-022-00760-4

Ejemplares similares

Genomic evaluation by including dominance effects and inbreeding depression for purebred and crossbred performance with an application in pigs
por: Xiang, Tao, et al.
Publicado: (2016)

Genomic selection models for directional dominance: an example for litter size in pigs
por: Varona, Luis, et al.
Publicado: (2018)

Genomic BLUP including additive and dominant variation in purebreds and F1 crossbreds, with an application in pigs
por: Vitezica, Zulma G., et al.
Publicado: (2016)

Dominance and epistatic genetic variances for litter size in pigs using genomic models
por: Vitezica, Zulma G., et al.
Publicado: (2018)

Purebred and Crossbred Genomic Evaluation and Mate Allocation Strategies To Exploit Dominance in Pig Crossbreeding Schemes
por: González-Diéguez, David, et al.
Publicado: (2020)

Non-additive Effects in Genomic Selection
por: Varona, Luis, et al.
Publicado: (2018)

Genetic evaluation with major genes and polygenic inheritance when some animals are not genotyped using gene content multiple-trait BLUP
por: Legarra, Andrés, et al.
Publicado: (2015)

Genomic prediction of hybrid crops allows disentangling dominance and epistasis
por: González-Diéguez, David, et al.
Publicado: (2021)

Genomic analysis of dominance effects on milk production and conformation traits in Fleckvieh cattle
por: Ertl, Johann, et al.
Publicado: (2014)

SNP-based mate allocation strategies to maximize total genetic value in pigs
por: González-Diéguez, David, et al.
Publicado: (2019)

Computing strategies for multi-population genomic evaluation
por: Legarra, Andrés, et al.
Publicado: (2022)

Influence of epistasis on response to genomic selection using complete sequence data
por: Forneris, Natalia S., et al.
Publicado: (2017)

Improved estimation of inbreeding and kinship in pigs using optimized SNP panels
por: Lopes, Marcos S, et al.
Publicado: (2013)

Swine Leukocyte Antigen Diversity in Canadian Specific Pathogen-Free Yorkshire and Landrace Pigs
por: Gao, Caixia, et al.
Publicado: (2017)

Integrated analysis of genome-wide association studies and 3D epigenomic characteristics reveal the BMP2 gene regulating loin muscle depth in Yorkshire pigs
por: Miao, Yuanxin, et al.
Publicado: (2023)

The correlation of substitution effects across populations and generations in the presence of nonadditive functional gene action
por: Legarra, Andres, et al.
Publicado: (2021)

A bivariate genomic model with additive, dominance and inbreeding depression effects for sire line and three-way crossbred pigs
por: Christensen, Ole F., et al.
Publicado: (2019)

SNP Miniplexes for Individual Identification of Random‐Bred Domestic Cats
por: Brooks, Ashley, et al.
Publicado: (2016)

Correction to: A bivariate genomic model with additive, dominance and inbreeding depression effects for sire line and three-way crossbred pigs
por: Christensen, Ole F., et al.
Publicado: (2020)

Single-Step Genomic Evaluations from Theory to Practice: Using SNP Chips and Sequence Data in BLUPF90
por: Lourenco, Daniela, et al.
Publicado: (2020)

Relationships among estimates of inbreeding depression, dominance and additive variance for linear traits in Holsteins
por: Misztal, I, et al.
Publicado: (1997)

Selective Sweeps Under Dominance and Inbreeding
por: Hartfield, Matthew, et al.
Publicado: (2020)

Genic and non-genic SNP contributions to additive and dominance genetic effects in purebred and crossbred pig traits
por: Mohammadpanah, Mahshid, et al.
Publicado: (2022)

Estimation of inbreeding using pedigree, 50k SNP chip genotypes and full sequence data in three cattle breeds
por: Zhang, Qianqian, et al.
Publicado: (2015)

Identifying Selection Signatures for Backfat Thickness in Yorkshire Pigs Highlights New Regions Affecting Fat Metabolism
por: Ma, Haoran, et al.
Publicado: (2019)

Estimation of Variance Components and Genomic Prediction for Individual Birth Weight Using Three Different Genome-Wide SNP Platforms in Yorkshire Pigs
por: Lee, Jungjae, et al.
Publicado: (2020)

Analysis of gene expression patterns by microarray hybridization in blood mononuclear cells of SLA-DRB1 defined Canadian Yorkshire pigs
por: Nino-Soto, Maria I, et al.
Publicado: (2008)

Metafounders are related to F(st) fixation indices and reduce bias in single-step genomic evaluations
por: Garcia-Baccino, Carolina A., et al.
Publicado: (2017)

Estimation of Genetic Parameters for Pork Belly Components in Yorkshire Pigs
por: Kang, H. S., et al.
Publicado: (2015)

Difference in expression patterns of placental cholesterol transporters, ABCA1 and SR-BI, in Meishan and Yorkshire pigs with different placental efficiency
por: Hong, Linjun, et al.
Publicado: (2016)

Genome-Wide Association Study and Fine Mapping Reveals Candidate Genes for Birth Weight of Yorkshire and Landrace Pigs
por: Li, Yong, et al.
Publicado: (2020)

The fecal microbiota composition of boar Duroc, Yorkshire, Landrace and Hampshire pigs
por: Xiao, Yingping, et al.
Publicado: (2017)

Genome-wide DNA methylation analysis in Chinese Chenghua and Yorkshire pigs
por: Wang, Kai, et al.
Publicado: (2021)

Identification of SNPs and Candidate Genes for Milk Production Ability in Yorkshire Pigs
por: Shi, Lijun, et al.
Publicado: (2021)

Divergence of Liver Lipidomes in Tibetan and Yorkshire Pigs Living at Different Altitudes
por: Luo, Wei, et al.
Publicado: (2023)

Genome-wide association mapping including phenotypes from relatives without genotypes in a single-step (ssGWAS) for 6-week body weight in broiler chickens
por: Wang, Huiyu, et al.
Publicado: (2014)

Estimating dominance genetic variances for growth traits in American Angus males using genomic models
por: Garcia-Baccino, Carolina A, et al.
Publicado: (2019)

Genotypic covariance matrices and their inverses for models allowing dominance and inbreeding
por: Smith, SP, et al.
Publicado: (1990)

Effect of recent and ancient inbreeding on production and fertility traits in Canadian Holsteins
por: Makanjuola, Bayode O., et al.
Publicado: (2020)

HISTOCOMPATIBILITY TYPE AND IMMUNE RESPONSIVENESS IN RANDOM BRED HARTLEY STRAIN GUINEA PIGS
por: Martin, William John, et al.
Publicado: (1970)

Cannot write session to /tmp/vufind_sessions/sess_pacqeoo00bcu606nlungtae1sk