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Endometrial cancer prognosis prediction using correlation models based on CDK family genes

Cyclin-dependent kinases (CDKs) play an important role in cell division. Given that abnormal cell proliferation caused by dysregulation of cell division is one of the major causes of endometrial cancer (EC), it is important to elucidate the role of CDK family genes in the diagnosis and prognosis of...

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Autores principales: Gu, Xianhua, Shen, Honghong, Bai, Wenqi, Xiang, Zheng, Li, Xinwei, Zhang, Rong, Shi, Fan, Li, Huiyuan, Zhu, Guangzheng, Guo, Suyang
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Frontiers Media S.A. 2022
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9589062/
https://www.ncbi.nlm.nih.gov/pubmed/36299580
http://dx.doi.org/10.3389/fgene.2022.1021600
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author Gu, Xianhua
Shen, Honghong
Bai, Wenqi
Xiang, Zheng
Li, Xinwei
Zhang, Rong
Shi, Fan
Li, Huiyuan
Zhu, Guangzheng
Guo, Suyang
author_facet Gu, Xianhua
Shen, Honghong
Bai, Wenqi
Xiang, Zheng
Li, Xinwei
Zhang, Rong
Shi, Fan
Li, Huiyuan
Zhu, Guangzheng
Guo, Suyang
author_sort Gu, Xianhua
collection PubMed
description Cyclin-dependent kinases (CDKs) play an important role in cell division. Given that abnormal cell proliferation caused by dysregulation of cell division is one of the major causes of endometrial cancer (EC), it is important to elucidate the role of CDK family genes in the diagnosis and prognosis of EC. In this study, The Cancer Genome Atlas (TCGA) database was used to analyze the frequency of copy number variations and somatic mutations in 26 CDK family genes. Subsequently, the expression of these genes in EC was assessed, and their relationship with overall survival (OS) was examined via Kaplan–Meier analysis to assess their prognostic significance. A prognostic model based on seven CDK genes was constructed using Lasso and Cox regression, and the predictive performance of the model was analyzed using Kaplan–Meier analysis and column line plots. The correlation between CDK genes and immune cells was also examined. Patients with EC in the high-risk group had a poorer prognosis. The results of qRT-PCR and immunohistochemical analyses validated that CDK16 is highly expressed in EC tissues. Patients with EC with high CDK16 expression had worse 10-year OS than patients with low CDK16 expression. These findings suggest that the prognostic model constructed based on CDK genes can help to develop individualized and targeted treatment strategies for patients with EC.
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spelling pubmed-95890622022-10-25 Endometrial cancer prognosis prediction using correlation models based on CDK family genes Gu, Xianhua Shen, Honghong Bai, Wenqi Xiang, Zheng Li, Xinwei Zhang, Rong Shi, Fan Li, Huiyuan Zhu, Guangzheng Guo, Suyang Front Genet Genetics Cyclin-dependent kinases (CDKs) play an important role in cell division. Given that abnormal cell proliferation caused by dysregulation of cell division is one of the major causes of endometrial cancer (EC), it is important to elucidate the role of CDK family genes in the diagnosis and prognosis of EC. In this study, The Cancer Genome Atlas (TCGA) database was used to analyze the frequency of copy number variations and somatic mutations in 26 CDK family genes. Subsequently, the expression of these genes in EC was assessed, and their relationship with overall survival (OS) was examined via Kaplan–Meier analysis to assess their prognostic significance. A prognostic model based on seven CDK genes was constructed using Lasso and Cox regression, and the predictive performance of the model was analyzed using Kaplan–Meier analysis and column line plots. The correlation between CDK genes and immune cells was also examined. Patients with EC in the high-risk group had a poorer prognosis. The results of qRT-PCR and immunohistochemical analyses validated that CDK16 is highly expressed in EC tissues. Patients with EC with high CDK16 expression had worse 10-year OS than patients with low CDK16 expression. These findings suggest that the prognostic model constructed based on CDK genes can help to develop individualized and targeted treatment strategies for patients with EC. Frontiers Media S.A. 2022-10-10 /pmc/articles/PMC9589062/ /pubmed/36299580 http://dx.doi.org/10.3389/fgene.2022.1021600 Text en Copyright © 2022 Gu, Shen, Bai, Xiang, Li, Zhang, Shi, Li, Zhu and Guo. https://creativecommons.org/licenses/by/4.0/This is an open-access article distributed under the terms of the Creative Commons Attribution License (CC BY). The use, distribution or reproduction in other forums is permitted, provided the original author(s) and the copyright owner(s) are credited and that the original publication in this journal is cited, in accordance with accepted academic practice. No use, distribution or reproduction is permitted which does not comply with these terms.
spellingShingle Genetics
Gu, Xianhua
Shen, Honghong
Bai, Wenqi
Xiang, Zheng
Li, Xinwei
Zhang, Rong
Shi, Fan
Li, Huiyuan
Zhu, Guangzheng
Guo, Suyang
Endometrial cancer prognosis prediction using correlation models based on CDK family genes
title Endometrial cancer prognosis prediction using correlation models based on CDK family genes
title_full Endometrial cancer prognosis prediction using correlation models based on CDK family genes
title_fullStr Endometrial cancer prognosis prediction using correlation models based on CDK family genes
title_full_unstemmed Endometrial cancer prognosis prediction using correlation models based on CDK family genes
title_short Endometrial cancer prognosis prediction using correlation models based on CDK family genes
title_sort endometrial cancer prognosis prediction using correlation models based on cdk family genes
topic Genetics
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9589062/
https://www.ncbi.nlm.nih.gov/pubmed/36299580
http://dx.doi.org/10.3389/fgene.2022.1021600
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